0
votes
4
replies
1.1k
views
annaffy - saveHTML changed behaviour in newer versions
updated 18.3 years ago by ▴ 220 • written 18.3 years ago by ▴ 970
0
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3
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1.9k
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Biomart query in Web interface Vs. biomaRt package?
GO PROcess biomaRt GO PROcess biomaRt
updated 18.3 years ago by ▴ 500 • written 18.3 years ago by ▴ 30
0
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0
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907
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Venn Diagram for 2, 3 and 4 sets (can be extended for more)
18.3 years ago Gordon Smyth 53k
0
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0
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933
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limma now on Bioconductor only, not CRAN
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18.3 years ago Gordon Smyth 53k
0
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1
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1.4k
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combining data from two R arrays
GO Survival annotate genefilter vsn tilingArray GO Survival annotate genefilter vsn
18.3 years ago Richard Harrison ▴ 70
0
votes
1
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2.9k
views
Venn Diagram for 2, 3 and 4 sets (can be extended for more)
GO limma GO limma
updated 18.3 years ago by ▴ 20 • written 18.3 years ago by 53k
0
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2
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1.7k
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Venn Diagram for 2, 3 and 4 sets (can be extended for
GO limma GO limma
updated 18.3 years ago by ▴ 70 • written 18.3 years ago by ★ 1.4k
0
votes
1
reply
654
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processCGH in snapCGH package
updated 18.3 years ago by ▴ 30 • written 18.3 years ago by ▴ 10
0
votes
4
replies
2.0k
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running time of snapCGH processCGH and runDNAcopy
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updated 18.3 years ago by ▴ 230 • written 18.3 years ago by ▴ 110
0
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2
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1.4k
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GOstats - defining the gene universe
GOstats GOstats
updated 18.3 years ago by 68k • written 18.3 years ago by ▴ 20
0
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0
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1.4k
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topTable threshold on p-value and logFC [Re: was design matrix]
18.3 years ago Gordon Smyth 53k
0
votes
4
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1.4k
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Venn Diagram for 2, 3 and 4 sets (can be extended for more)
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updated 18.3 years ago by 68k • written 18.3 years ago by ▴ 90
0
votes
1
reply
1.3k
views
Installing BioC + R 2.6: warnings
Biostrings Biostrings
updated 18.3 years ago by 16k • written 18.3 years ago by ▴ 320
0
votes
1
reply
520
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Normalization with a reference sample
updated 18.3 years ago by ★ 4.3k • written 18.3 years ago by ▴ 50
0
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5
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1.3k
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Making a PD package for Oligo
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updated 18.3 years ago by ★ 4.3k • written 18.3 years ago by ▴ 40
0
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0
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699
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simple biomaRt query
18.3 years ago Heidi Dvinge ★ 2.0k
0
votes
5
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1.4k
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limma for R 2.6
updated 18.3 years ago by 25k • written 18.3 years ago by ▴ 260
0
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0
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1.2k
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CfP: Hackathon on Comparative Methods in R
Visualization Visualization
18.3 years ago Hilmar Lapp ▴ 10
0
votes
2
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1.5k
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AnnBuilder: problem with kegg url?
Annotation GO Organism annotate AnnBuilder Annotation GO Organism annotate AnnBuilder
updated 18.3 years ago by ★ 7.2k • written 18.3 years ago by ▴ 20
0
votes
1
reply
942
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brb arraytools and excel 2007
updated 18.3 years ago by 21k • written 18.3 years ago by ▴ 320
0
votes
2
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2.3k
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Agilent 4x44 single color expression arrays
Normalization probe vsn limma gcrma Normalization probe vsn limma gcrma
18.3 years ago Ido M. Tamir ▴ 320
0
votes
0
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848
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vsn and scaling
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18.3 years ago Wolfgang Huber ★ 13k
0
votes
2
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1.6k
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Chromosome 23 and 24 dropped after run snapCGH processCGH
aCGH Survival Cancer annotate genefilter affy DNAcopy aCGH GLAD tilingArray snapCGH
updated 18.3 years ago by ▴ 40 • written 18.3 years ago by ▴ 110
0
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0
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1.1k
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Announcement: Software developer training for Galaxy, Tuesday, October 23 4:00pm - 6:00pm, San Diego (just before the ASHG meeting)
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18.3 years ago Ross Lazarus ▴ 90
0
votes
1
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1.2k
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predict vsn with reference
Microarray affy vsn limma affyio Microarray affy vsn limma affyio
updated 18.3 years ago by ★ 13k • written 18.3 years ago by ▴ 10
0
votes
8
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1.6k
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design matrix
updated 18.3 years ago by 68k • written 18.3 years ago by ▴ 470
0
votes
0
replies
419
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error with affyPLM
18.3 years ago Tony Chiang ▴ 570
0
votes
2
replies
831
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adapt exprSet class
updated 18.3 years ago by 25k • written 18.3 years ago by ▴ 30
0
votes
1
reply
758
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GOstats: Coloring nodes in the induced GO graph
updated 18.3 years ago by ▴ 220 • written 18.3 years ago by ★ 1.1k
0
votes
0
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653
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Microarray bioinformatics position announcement - CRG - Barcelona, Spain
18.3 years ago Lauro Sumoy Van Dyck ▴ 70
0
votes
5
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1.5k
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About beadarray package
updated 18.3 years ago by ▴ 410 • written 18.3 years ago by ▴ 260
0
votes
1
reply
796
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limmaGUI and Agilent output files!
updated 18.3 years ago by ▴ 450 • written 18.3 years ago by ▴ 10
0
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0
replies
846
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DNAString ("GC") -- error in nchar? [resolved]
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18.3 years ago Paul Shannon ★ 1.1k
0
votes
2
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1.1k
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CEL files with different size
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updated 18.3 years ago by ★ 2.4k • written 18.3 years ago by ▴ 10
0
votes
1
reply
1.5k
views
All 3' UTRs for an organism - biomaRt package
updated 18.3 years ago by ▴ 500 • written 18.3 years ago by ▴ 20
0
votes
0
replies
464
views
Effect size and combined data sets
18.3 years ago Andrej Kastrin ▴ 90
0
votes
0
replies
1.2k
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CAMDA07 publishing in Genomics
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18.3 years ago Ana Conesa ▴ 340
0
votes
0
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1.3k
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findest Du die Frauen, die genau das gleiche suchen wie Du! ( mu�ten)
18.3 years ago protest2718@indiatimes.com ▴ 10
0
votes
2
replies
1.6k
views
vsm2
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updated 18.3 years ago by ★ 13k • written 18.3 years ago by ▴ 70
0
votes
1
reply
582
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vsn and scaling
updated 18.3 years ago by ★ 13k • written 18.3 years ago by ▴ 10
0
votes
4
replies
1.5k
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processCGH with snapCGH
18.3 years ago jhs1jjm@leeds.ac.uk ▴ 230
0
votes
2
replies
1.0k
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Beadarray negative background values (bug?)
Cancer beadarray Cancer beadarray
updated 18.3 years ago by ▴ 460 • written 18.4 years ago by ▴ 10
0
votes
1
reply
1.5k
views
beadarray: combining several beadsummary data objects
Biobase geneplotter affy affyio beadarray Biobase geneplotter affy affyio beadarray
updated 18.3 years ago by ▴ 460 • written 18.3 years ago by ▴ 70
0
votes
12
replies
2.2k
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DNAString ("GC") -- error in nchar?
Biostrings Biostrings
updated 18.3 years ago by 25k • written 18.3 years ago by ★ 1.1k
0
votes
1
reply
481
views
simple biomaRt query, found an error: old version
updated 18.3 years ago by ▴ 500 • written 18.3 years ago by ▴ 350
0
votes
2
replies
876
views
simple biomaRt query
updated 18.3 years ago by ▴ 500 • written 18.3 years ago by ▴ 350
0
votes
2
replies
1.2k
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lumi Package lumiR error
updated 18.3 years ago by ▴ 700 • written 18.3 years ago by ▴ 220
0
votes
1
reply
1.2k
views
maSigPro
updated 18.3 years ago by ▴ 340 • written 18.3 years ago by ▴ 700
0
votes
1
reply
775
views
spottype file for 2-color array
updated 18.3 years ago by ▴ 450 • written 18.3 years ago by ▴ 60
0
votes
0
replies
446
views
Read depth analysis
18.3 years ago João Fadista ▴ 500
46,730 results • Page 776 of 935
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Comment: Bile acid analysis with limpa by ATpoint ★ 5.0k
Wilcox/Mann-Whitney-U cannot work because it is bound to sample size even when all of group X are lower than all of group Y. At 4 vs 3 the …
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I could install ChemmineOB on my MacBook Pro M1 Max using this procedure **1. Install open-babel and eigen using homebrew and create a cus…
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The design matrix that I described above is completely general. I imagine that it would be possible to use the same approach to generate fu…
Comment: Making a Full Rank Model for Allele-Specific Expression with DESeq2 by chp265 • 0
Cool, glad to hear I wasn't missing some functionality in DESeq2. I don't know that much about the differences between DESeq2 vs edgeR; my …
Comment: Making a Full Rank Model for Allele-Specific Expression with DESeq2 by Michael Love 43k
Yes, so for one thing, note that Gordon has provided code for doing what you are asking in edgeR, which you can go ahead and use. You aske…
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A: DESeq2: Is it possible to convert read counts to expression values via TPM and r
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Answer: When to use edgeR or limma
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