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BioinfGuru
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5 days ago • updated 4 days ago
Yveto
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updated 1 day ago by
damian.szk
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written 1 day ago by
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2 days ago
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16 hours ago • updated 12 hours ago
Abiologist
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12 hours ago
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2 days ago
oliverelijhan
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Recent ...
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Answer: Numerical differences in DESeq2 output depending on different design matrix cons
by
Michael Love
42k
Yes there can be small numerical differences in the estimated quantities because of how the algorithms decide to stop iterating.
Answer: DESeq2- Mysterious interaction suppresses DEGs
by
Michael Love
42k
Removing samples from one group nevertheless changes the variance estimation (dispersion) for all comparisons. So you could have pushed one…
Comment: Ensembl plants at annotationHub?
by
Daniele
•
0
Hi,
I'm using Ensembl Plants release 59 with the IWGSC RefSeq v1.1 gene annotation.
Thanks a lot for replying so quickly!
Comment: Numerical differences in DESeq2 output depending on different design matrix cons
by
swbarnes2
★
1.4k
If you restrict yourself to, say, genes with a baseMean > 50, are the numerical differences between the two designs significant?
Comment: DESeq2- Mysterious interaction suppresses DEGs
by
shaunpeterson
•
0
The images I tried to attach didn't attach. Here is the PCA (MDS) of all the samples, with the Cortex outlier highlighed.
UPF, Barcelona, Spain, 41 minutes ago
EMBL Heidelberg, 3 hours ago
Sweden, 3 hours ago
WEHI, Melbourne, Australia, 4 hours ago
The city by the bay, 4 hours ago
UPF, Barcelona, Spain, 41 minutes ago
EMBL Heidelberg, 3 hours ago
Sweden, 3 hours ago
WEHI, Melbourne, Australia, 4 hours ago
The city by the bay, 4 hours ago
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