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News:
List of Deprecated Packages for Bioc3.18
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10 months ago • updated 14 days ago
shepherl
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News:
European Bioconductor Conference 2023 planning
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Maria Doyle
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flowBeads
15 days ago
bocsci11
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Course Manipulation of NGS Data for Genomic and Population Genetics Analyses
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Call for proposals: European CarpentryConnect - 12-14 November 2024, at EMBL Heidelberg
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Wolfgang Huber
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Interested in the analysis of Spatial Omics data?
tidySpatialExperiment
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9 days ago
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Bioconductor 3.19 is Released!
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19 hours ago
shepherl
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[Pre-print] Transcriptome-scale spatial gene expression in the human dorsolateral prefrontal cortex
biorxiv
spatialLIBD
News
written 4.2 years ago by
Leonardo Collado Torres
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20 days ago
shepherl
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Bioconductor
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2 days ago
Maria Doyle
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Comment: More regions in union when increasing DBA$config$mergeOverlap
by
Ian D.
▴ 70
Hello. Thanks for the reply. Sorry about this. My testing is telling me that 1 is the default (a gap), not -1 (1bp overlap). Negative …
Comment: Differences in differential analysis methods for RNA-Seq
by
ATpoint
★ 4.1k
> I am just re-processing due to being uncertain about how they used the edgeR analysis to reach gene level edgeR devs published something…
Comment: Differences in differential analysis methods for RNA-Seq
by
james.zhang20
• 0
Thanks for the explanations, it has helped clarify some things. Unfortunately, I am working from an early access public dataset (https://do…
Answer: Deseq2 and Normalization of RNA sequencing data
by
ATpoint
★ 4.1k
There is no expectation of normality that is realistic in terms of expression level. Levels are widely different between genes, and counts …
Comment: Differences in differential analysis methods for RNA-Seq
by
ATpoint
★ 4.1k
MAGeCK is a command line tool that is easy to use. I recommend you use it because a) the logFCs from DESeq2 and MAGeCK will be very similar…
Votes
A: Error in DESeqDataSet : some values in assay are not integers
Bioconductor 3.19 is Released!
Bioconductor 3.19 is Released!
Answer: DEseq2 coefficient
SPIA plotP giving error
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