4 days ago • updated 1 day ago
BioinfGuru
▴
30
1
vote
2
replies
228
views
0
votes
3
replies
172
views
0
votes
2
replies
95
views
5 days ago • updated 3 days ago
Yveto
•
0
0
votes
0
replies
34
views
0
votes
0
replies
35
views
0
votes
0
replies
40
views
0
votes
0
replies
62
views
2 days ago
Anton01
•
0
0
votes
0
replies
14
views
2 days ago
oliverelijhan
0
0
votes
0
replies
46
views
2 days ago
Shaimaa Gamal
•
0
0
votes
0
replies
46
views
2 days ago
Ειρήνη
•
0
0
votes
3
replies
85
views
updated 1 day ago by
damian.szk
▴
80
•
written 1 day ago by
ninidea
•
0
0
votes
0
replies
21
views
8 hours ago • updated 4 hours ago
Abiologist
•
0
0
votes
0
replies
15
views
3 hours ago
pickingastar
•
0
0
votes
0
replies
49
views
0
votes
0
replies
11
views
Recent ...
Replies
Answer: Numerical differences in DESeq2 output depending on different design matrix cons
by
Michael Love
42k
Yes there can be small numerical differences in the estimated quantities because of how the algorithms decide to stop iterating.
Answer: DESeq2- Mysterious interaction suppresses DEGs
by
Michael Love
42k
Removing samples from one group nevertheless changes the variance estimation (dispersion) for all comparisons. So you could have pushed one…
Comment: Numerical differences in DESeq2 output depending on different design matrix cons
by
JKim
•
0
The 1st model has an interaction term, but the 2nd model doesn't have the interaction term. That makes the difference.
Comment: Ensembl plants at annotationHub?
by
Daniele
•
0
Hi,
I'm using Ensembl Plants release 59 with the IWGSC RefSeq v1.1 gene annotation.
Thanks a lot for replying so quickly!
Comment: Numerical differences in DESeq2 output depending on different design matrix cons
by
swbarnes2
★
1.4k
If you restrict yourself to, say, genes with a baseMean > 50, are the numerical differences between the two designs significant?
Votes
Awards
• All
Popular Question to
Koen Van den Berge
▴
180
Popular Question to
shepherl
3.9k
Popular Question to
Ken C
•
0
Popular Question to
Johannes Rainer
★
2.0k
Locations
• All
United States, 1 hour ago
United States, 1 hour ago
Sweden, 2 hours ago
Hong Kong, 2 hours ago
Hong Kong, 3 hours ago
United States, 1 hour ago
United States, 1 hour ago
Sweden, 2 hours ago
Hong Kong, 2 hours ago
Hong Kong, 3 hours ago
Traffic: 459 users visited in the last hour
Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by the
version 2.3.6
version 2.3.6