Bioconductor 10x

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993

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scrn 10x scRNAseq emptyDrops DropletUtils

5 months ago • updated 4 months ago Peter Hickey ▴ 760

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1.7k

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labels PBMC SingleCellMultiModal 10X

updated 9 months ago by ATpoint ★ 5.0k • written 9 months ago by javier.ruizramirez • 0

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1.1k

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CellRanger emptyDrops scRNAseq 10X

21 months ago rocanja ▴ 60

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1.5k

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SingleCell emptyDrops 10X

updated 2.7 years ago by Peter Hickey ▴ 760 • written 2.7 years ago by sandra.garces.19 • 0

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1.3k

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RNAseq 10X

2.8 years ago wt215 • 0

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4.5k

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DropletUtils emptyDrops scRNA scRNAseq 10x

3.4 years ago Peter Hickey ▴ 760

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1.6k

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DropletUtils emptyDrops 10x

updated 5.0 years ago by Aaron Lun ★ 29k • written 5.0 years ago by Peter Hickey ▴ 760

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2.2k

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deseq2 zinbwave 10X scRNA-seq Differential expression

updated 5.5 years ago by Michael Love 43k • written 5.5 years ago by vincent.croset ▴ 20

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3.8k

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10x scrna-seq

updated 6.7 years ago by Aaron Lun ★ 29k • written 6.7 years ago by jma1991 ▴ 70

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9.7k

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single-cell 10X Cell calling DropletUtils cellranger

updated 6.8 years ago by Aaron Lun ★ 29k • written 6.8 years ago by xingxd16 ▴ 20

10 results • Page 1 of 1

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Comment: Guitar R package requires update due to dependency GenomicFeatures by ferran.llobet.cabau ▴ 10

Thank you @seandavi for your feedback. I followed your recommendations and generated a [pull request][1] including the fix for this issue…

Comment: Ensembl plants at annotationHub? by Guido Hooiveld ★ 4.1k

Hope you don't mind I am not Johannes... ;-) Note that you nowadays can generate these yourselves using the `docker` image Johannes made av…

Comment: How does contrasts.fit do in limma to extract comparisons with a model having in by jtsy6383 • 0

Thanks for the reminder about DiffVar (for that project I ended up using GAMLSS in the end and haven't touched DiffVar since) and the alter…

Comment: Ensembl plants at annotationHub? by jwp48 • 0

Dear Johannes, Would it be possible to generate a EnsDb for the newest Medicago V5 genome release? Medicago truncatula A17 r5.0 This woul…

Answer: please provide a BibTeX citation for "Advanced Single-Cell Analysis with Biocond by Ludwig Geistlinger ▴ 80

When referring to the OSCA book including individual sub-books please cite the OSCA paper: Amezquita, R.A., Lun, A.T.L., Becht, E. et a…

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limma moderated t-statistics and B-statistics

Comment: Guitar R package requires update due to dependency GenomicFeatures

A: how to control age and gender effect in expression data using DESeq2

how to control age and gender effect in expression data using DESeq2

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