Bioconductor 10x

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929

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scrn 10x scRNAseq emptyDrops DropletUtils

3 months ago Peter Hickey ▴ 760

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1.7k

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labels PBMC SingleCellMultiModal 10X

updated 7 months ago by ATpoint ★ 5.0k • written 7 months ago by javier.ruizramirez • 0

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1.1k

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CellRanger emptyDrops scRNAseq 10X

20 months ago rocanja ▴ 60

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1.5k

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SingleCell emptyDrops 10X

updated 2.6 years ago by Peter Hickey ▴ 760 • written 2.6 years ago by sandra.garces.19 • 0

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1.2k

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RNAseq 10X

2.7 years ago wt215 • 0

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4.2k

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DropletUtils emptyDrops scRNA scRNAseq 10x

3.3 years ago Peter Hickey ▴ 760

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1.5k

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DropletUtils emptyDrops 10x

updated 4.9 years ago by Aaron Lun ★ 29k • written 4.9 years ago by Peter Hickey ▴ 760

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2.2k

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deseq2 zinbwave 10X scRNA-seq Differential expression

updated 5.4 years ago by Michael Love 43k • written 5.4 years ago by vincent.croset ▴ 20

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3.8k

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10x scrna-seq

updated 6.6 years ago by Aaron Lun ★ 29k • written 6.6 years ago by jma1991 ▴ 70

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9.3k

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single-cell 10X Cell calling DropletUtils cellranger

updated 6.7 years ago by Aaron Lun ★ 29k • written 6.7 years ago by xingxd16 ▴ 20

10 results • Page 1 of 1

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Comment: Question about DESeq2 Design for Paired Treatment Study by ATpoint ★ 5.0k

It's a paired analysis so you don't need any patient-specific covariates such as age and sex. What you call batch effect might just be the …

Comment: problem reading bam files into nucleR by efoss ▴ 10

I thought I might be able to track down a problematic line in the bam file by repeatedly splitting the bam file in and then running the co…

Answer: two questions about limma by Gordon Smyth 53k

Answered here: https://support.bioconductor.org/p/16318/

Comment: Highly similar RNA-seq samples in PCA - pooling or technical duplication? by Ahmed Salah • 0

Thank you very much! will take that into consideration

Comment: Large logFC but somewhat high FDR by JKim • 0

Thank you very much for taking the time to answer the question. I really appreciate your insights and comments.

Votes

Comment: Highly similar RNA-seq samples in PCA - pooling or technical duplication?

Answer: Large logFC but somewhat high FDR

Comment: upstream git branches of bioc-release

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Popular Question to jared.andrews07 ▴ 30

Popular Question to James W. MacDonald 68k