Bioconductor Annotation

Showing : Annotation • reset

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4.2k

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annotation

written 8.9 years ago by seeker • 0

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2.0k

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ChIPQC annotation rn6

updated 4 months ago by Raghavaram • 0 • written 3.6 years ago by Frédéric Crémazy • 0

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332

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DNAMethylation AnnotationHub EPICv2manifest annotation

updated 23 days ago by Tim Peters ▴ 180 • written 4 weeks ago by s.malik • 0

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2.0k

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Annotation affy oligo ffpe Annotation affy oligo ffpe

written 10.3 years ago by Guest User ★ 13k

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1.6k

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software error annotation

written 4.2 years ago by alan.g.hudson • 0

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673

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MicroRNAArrayData GSE97562 pd.hugene.1.0.st.v1 Annotation

updated 9 months ago by James W. MacDonald 65k • written 9 months ago by rodj5201 • 0

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1.2k

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Annotation

11 months ago Michael Steinbaugh ▴ 90

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935

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Annotation biomaRt

11 months ago RuBBiT0 ▴ 10

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711

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IlluminaHumanMethylationEPICmanifest ChAMP annotation

updated 11 months ago by James W. MacDonald 65k • written 11 months ago by Matilda • 0

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1.4k

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Annotation pathview Annotation pathview

written 9.8 years ago by Luo Weijun ★ 1.6k

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963

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Annotation biomaRt ensembldb

written 2.5 years ago by Lillian • 0

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464

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Annotation annotate DifferentialMethylation minfiDataEPIC

updated 7 months ago by Basti ▴ 780 • written 7 months ago by titangerd • 0

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211

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clusterProfiler annotation gseGO gsea OrgDb

updated 5 weeks ago by Guido Hooiveld ★ 3.9k • written 6 weeks ago by enee ▴ 10

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3.5k

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Bioconductor Annotation Ann

updated 7 months ago by James W. MacDonald 65k • written 7 months ago by Aytaç • 0

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397

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db0 release Annotation

7 months ago kayla.interdonato ▴ 160

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169

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ChIPSeq annotation ChIPpeakAnno

12 weeks ago nilanjanamani88 • 0

16 results • Page 1 of 1

Recent ...

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Answer: Once again a "Model matrix not full rank" by swbarnes2 ★ 1.3k

Replicate numbers, like the 1 in control_1 are fine in sample names, but never add them to anything else in colData. From the computer's p…

Answer: limma Intercept vs No-intercept models completely changing DMR results? by Gordon Smyth 50k

I'll add a little bit of general advice to James' answer. You seem to have the misunderstanding that you can change the design matrix but …

Answer: package goseq seems to be not available on the latest version of R by Gordon Smyth 50k

It is true that goseq isn't available for Bioc 3.19. That is because goseq depends on txbmaker, which is itself not yet available for Bioc…

Answer: limma Intercept vs No-intercept models completely changing DMR results? by James W. MacDonald 65k

This part: ``` design_intercept <- model.matrix(~Alt+Sex+Age+PC1, data=targets_Sherpa) colnames(design_intercept) <- c("AltSHP_LA","Al…

Comment: CombineArrays for EPIC and EPIC V2 by Kim • 0

Thank you Tim, this is a great help in getting me started!

Votes

Answer: limma Intercept vs No-intercept models completely changing DMR results?

Answer: CombineArrays for EPIC and EPIC V2

Answer: Too many significant genes when integrating gtex and tcga

Comment: Too many significant genes when integrating gtex and tcga

A: Print Differentially Expressed Exons From Dexseq Results

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