4.1 years ago
dakarai_esgdaille
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updated 7.4 years ago by
Valerie Obenchain
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written 7.4 years ago by
divyswar01
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updated 7.2 years ago by
rcavalca
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written 7.2 years ago by
cguzman.roma
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updated 5 months ago by
Mahmoud
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written 3.3 years ago by
rohitsatyam102
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21 months ago
eric.rhoncalderon
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3 months ago
hayleyw
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3.0 years ago
António Miguel de Jesus Domingues
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490
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3 months ago
chuanjiao6
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Recent ...
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Comment: DESeq2 Error in `.rowNamesDF<-`(x, value = value): Invalid 'row.names' length
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ussarizona
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Hi Michael,
Yes, I could figure it out what does the error mean. In my matrix I had the first colum GeneID while in my condition I only h…
Answer: Deseq2. decontXcounts not integers. Useful alternative?
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Michael Love
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Another option would be to put the per sample estimated contamination in the design. This is for example how RUV etc help remove spurious D…
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That depends on your analysis. Typically, for differential analysis (and convenience) you would produce a single set of peaks (e.g. by merg…
Comment: Deseq2. decontXcounts not integers. Useful alternative?
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camp
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Yes, @atpoint is correct. decontX decontaminated counts are not integers due to the way the variation inference algorithm works, but you ca…
Comment: Deseq2. decontXcounts not integers. Useful alternative?
by
ATpoint
★
4.0k
I do not know this decontamination tool you use but generally:
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