Log In
Sign Up
about
faq
Ask a question
Latest
News
Jobs
Tutorials
Tags
Users
New Post
Latest
News
Jobs
Tutorials
Tags
Users
Log In
Sign Up
About
Limit
all time
today
this week
this month
this year
Unanswered
All posts
Sort
Update
Answers
Bookmarks
Creation
Replies
Rank
Views
Votes
Showing :
Batch Correction
•
reset
3
votes
3
replies
1.9k
views
fastMNN based correction for large multi-run experiment requires a similar population set in all the individual datasets?
scrna-seq
integration
batch correction
updated 5.1 years ago by
Aaron Lun
★ 28k • written 5.1 years ago by
p.joshi
▴ 40
0
votes
1
reply
1.3k
views
Batch correction in Linear Models for methylation data
methylation
ComBat
Linear models
batch correction
AIC
updated 5.2 years ago by
Kevin Blighe
★ 4.0k • written 5.2 years ago by
lucasmiranda42
• 0
5
votes
3
replies
796
views
batch correction in DESeq2 > matrix not full rank > mitigate
DESeq2
batch correction
updated 5.2 years ago by
James W. MacDonald
68k • written 5.2 years ago by
MT
▴ 10
0
votes
3
replies
1.2k
views
Diffbind batch effect blocking error
Diffbind
ATAC
batch correction
blocking factor
updated 5.5 years ago by
Rory Stark
★ 5.2k • written 5.5 years ago by
rm1238
• 0
1
vote
1
reply
1.2k
views
All Pairwise Comparisons with DESeq2 While Controlling for Batch Effects: Does Reference Level Matter?
deseq2
differential expression
batch correction
design
updated 5.6 years ago by
Michael Love
43k • written 5.7 years ago by
wunderl
▴ 40
4
votes
4
replies
1.7k
views
Batch Correction: DESeq2 Linear Model vs Batch-Correction-Specific Algorithms (RUV, ComBat, ect.)
deseq2
differential expression
batch correction
updated 5.7 years ago by
Michael Love
43k • written 5.7 years ago by
wunderl
▴ 40
4
votes
5
replies
2.2k
views
Using SC3 with batch corrected MNN values
SC3
Scater
Scran
scRNA-Seq
Batch Correction
updated 5.8 years ago by
Vladimir Kiselev
▴ 150 • written 5.8 years ago by
hamza_karakurt
▴ 60
7 results • Page
1 of 1
Recent ...
Replies
Comment: error in ChAMP loading file
by
81becky
• 0
hi Giulia, it sounds like you're facing a frustating issue with your chAMP import. One common suggestion is to double-check your CSV fomat…
Answer: DESeq2 adujsted p-value cutoff seemingly not working
by
James W. MacDonald
68k
From `?results' ``` On p-values: By default, independent filtering is performed to select a set of genes for multiple tes…
Comment: Issue with assigning transcript IDs to reads when using summarizeOverlaps(mode =
by
SofieK
• 0
Thank you, I will try this and see.
Comment: DiffBind - question on the use of filtered or unfiltered input data
by
deltaexploitss
• 0
Data input is the adding of data into a computer. This can take place through an input device such as a keyboard. A user inputs data, which…
Comment: GenomeInfoDbData cannot install in R and warning had non-zero exit status
by
Renuka
• 0
how you did it pls explain
Votes
A: Effect of lfcThreshold on p-value in DESeq2
Answer: What benchmark should I use for setting the EdgeR filterByExpr min.count paramet
What benchmark should I use for setting the EdgeR filterByExpr min.count parameter?
Answer: Issue with assigning transcript IDs to reads when using summarizeOverlaps(mode =
Comment: Unused arguments error without used arguments in GSVA?
Awards
• All
Popular Question
to
Vincent J. Carey, Jr.
6.7k
Teacher
to
Gordon Smyth
52k
Scholar
to
James W. MacDonald
68k
Popular Question
to
Sara
▴ 20
Scholar
to
Michael Love
43k
Locations
• All
Canada,
8 minutes ago
Kazakhstan,
9 minutes ago
United States,
30 minutes ago
United States,
56 minutes ago
United States,
1 hour ago
Traffic: 644 users visited in the last hour
Content
Search
Users
Tags
Badges
Help
About
FAQ
Access
RSS
API
Stats
Use of this site constitutes acceptance of our
User Agreement and Privacy Policy
.
Powered by the
version 2.3.6