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Job: Postdoc and PhD student in Bioinformatics/Biostatistics
NGS R statistics genomics big data Job
5.7 years ago • updated 4.9 years ago Luo Weijun ★ 1.6k
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Job: Data Manager - BC Cancer Research Center, Vancouver BC
computational genomic big data bioinformatics Job
5.4 years ago jmaanaki • 0
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Job: Postdoctoral positions in drug discovery and genome data science
computational biology biostatistics big data data science drug discovery Job
5.7 years ago Thomas Girke ★ 1.7k
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How to handle big data sets (>10GB) in Bioconductor packages?
big data methylmix memory problem
updated 6.2 years ago by 25k • written 6.2 years ago by • 0
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Subsetting Rle with ORF-sequence-positions by the 3 frames
Rle Big data coverageByTranscript
6.6 years ago • updated 6.5 years ago hauken_heyken ▴ 80
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What is the recommended method for running WGCNA on large metatranscriptomic dataset?
wgcna transcriptome big data metagenomics gene expression
6.7 years ago jol.espinoz ▴ 40
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AnnotationHub: confusing pValue/qValue for (some) Roadmap records
roadmap project annotationhub epigenomics big data
updated 8.5 years ago by ★ 6.8k • written 8.5 years ago by ▴ 350
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Job: Postdoctoral Research Associate Position- Harvard Medical School (Probabilistic Algorithms and Software for Biomedical Big Data)
Probabilistic Algorithms Big Data Job
9.5 years ago Doe, Aimee ▴ 40
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Answer: Combining RNAseq and microarray data using edgeR/limma-voom by James W. MacDonald 67k
No, that's not a good idea at all. You should be doing a meta-analysis with these data rather than trying to combine like that. `GeneMeta` …
Answer: GOstats kegg analysis in wheat - help - none of the objects in the first column by James W. MacDonald 67k
Check the help page for `KEGGFrame`. Your columns are out of order.
Comment: Question about using LRT test for time course experiments with DESeq2 by James W. MacDonald 67k
You are testing the interaction, so you are asking for those genes that change at any time *differently, depending on the treatment*. If co…
Comment: DESeq Input from Salmon + tximport/tximeta by LuciaNhu • 0
Thank you both. Special thanks from Prof. Michael Love. It's rare to find tool authors who respond to users so quickly and supportively. Ma…
Comment: Question about using LRT test for time course experiments with DESeq2 by Denise • 0
Hi James, Yes, I understand that the p-values are with respect to the full versus reduced model comparison. However, the "genes that cha…
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Comment: DESeq Input from Salmon + tximport/tximeta
Comment: DESeq Input from Salmon + tximport/tximeta
Comment: DESeq Input from Salmon + tximport/tximeta
Answer: DESeq Input from Salmon + tximport/tximeta
Answer: featureCounts segmentation fault with large chromosomes
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