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News: Win 1 of 50 free virtual registrations to BioC Asia 2022 (Dec 1-2, 2022)
Asia BioCAsia Conferences Events BioC
written 2.3 years ago by ▴ 750
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can't update bioconductor 3.18
BioCor bioc BiocVersion
15 months ago feifan • 0
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JAVA_HOME cannot be determined on Windows on Bioconductor platform report
bioc Bioconductor
updated 3.3 years ago by 16k • written 3.3 years ago by ▴ 20
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Multiple R versions
R bioc
updated 6.0 years ago by 25k • written 6.0 years ago by • 0
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BioC happening in 2018?
BioC 2018 Course
7.5 years ago s.munster ▴ 40
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1.7k
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Errors installing RforProteomics
Bioc package installation rforproteomics
updated 9.0 years ago by 1.6k • written 9.0 years ago by • 0
6 results • Page 1 of 1
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Answer: SingleR with multiple single cell references by Aaron Lun ★ 28k
> Is it necessary to piece together the individual steps manually (e.g. aggregateReference, trainSingleR, classifySingleR, combineRecompute…
Answer: Automatically install dependencies by ATpoint ★ 4.7k
The BiocManager, which is sort of an extended wrapper around `install.packages`, installs all R dependencies. If you see errors then this i…
Answer: To count or not to count multi-overlapping reads? by Gordon Smyth 52k
> How does it handle reads that map to a gene that is located in a region that also has another gene but on the alternate strand? Overlapp…
Comment: Weird p-values using DESeq2? by ATpoint ★ 4.7k
This does not look like normalized counts but raw counts. Consider using `counts(dds, normalized = TRUE)` or the output of `normTransform()…
Answer: Weird p-values using DESeq2? by Wolfgang Huber ★ 13k
Dear Ingrid, thank you for asking. Can you provide the input count matrix (you can "pseudonymize" the biological conditions and the gene n…
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A: Fraction count for multi mapping reads; how to generate input file for Deseq2 fo
Comment: Weird p-values using DESeq2?
Comment: Overcoming confounding in batch effect correction
Answer: Store Matrix in DataFrame Cell
Answer: enrichGOgradient color change
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