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Asia BioCAsia Conferences Events BioC

written 2.2 years ago by Peter Hickey ▴ 740

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BioCor bioc BiocVersion

14 months ago feifan • 0

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bioc Bioconductor

updated 3.2 years ago by Hervé Pagès 16k • written 3.2 years ago by cannin ▴ 20

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R bioc

updated 5.9 years ago by Martin Morgan 25k • written 5.9 years ago by pawan12394 • 0

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BioC 2018 Course

7.4 years ago s.munster ▴ 40

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Bioc package installation rforproteomics

updated 8.9 years ago by Laurent Gatto 1.6k • written 8.9 years ago by sarahgrogan • 0

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Comment: iam not able to do retrive data using GEOquery R package by James W. MacDonald 67k

Another alternative is to use the `GEOmetadb` package ([vignette here)][1], which will allow you to make queries to identify GEO datasets t…

Answer: iam not able to do retrive data using GEOquery R package by James W. MacDonald 67k

Before you try to use a function, you should read the help page to ensure that you are using the correct argument type. As an example, here…

Comment: Different annotation packages (org.Mm.eg.db, EnsDb.Mmusculus.v79, BiomaRt) retu by James W. MacDonald 67k

It's not the version control in R/Bioconductor though. It's the version of the genome. OP used Ensembl build 113 to align and then noted th…

Comment: Why did PCA plots look exactly the same after adjusting for batch covariate in D by Quang ▴ 10

Also, Michael, when I used SVA in addition, so I have the `design = ~ Date_lysed + SV1 + condition_subset`, do I just set `mat_corrected <-…

Comment: Differential variability modelling with vst() expression by Michael Love 43k

See Gordon's reply below for an implementation you can use directly.

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Answer: Differential variability modelling with vst() expression

Comment: Different annotation packages (org.Mm.eg.db, EnsDb.Mmusculus.v79, BiomaRt) retu

Answer: Different annotation packages (org.Mm.eg.db, EnsDb.Mmusculus.v79, BiomaRt) retu

Comment: Why did PCA plots look exactly the same after adjusting for batch covariate in D

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