Showing : BioMart • reset
0
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3
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1.6k
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BioMart server down yesterday and today? Error
biomaRt biomaRt
updated 13.7 years ago by ★ 8.2k • written 13.7 years ago by ▴ 100
0
votes
6
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2.0k
views
[Hinxton #251937] RE: GenomicFeatures::makeTranscriptDbFromBiomart - BioMart data anomaly: for some transcripts, the cds cumulative length inferred f…
Cancer Organism biomaRt GenomicFeatures genomes Cancer Organism biomaRt GenomicFeatures
updated 13.7 years ago by ▴ 660 • written 13.7 years ago by 16k
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929
views
(no subject)
biomaRt oligo xmapcore biomaRt oligo xmapcore
13.7 years ago james perkins ▴ 300
0
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0
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1.5k
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Ensembl gene ids corresponding to affymetrix rat exon array transcript level ids
biomaRt oligo biomaRt oligo
13.7 years ago James Perkins ▴ 120
0
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1
reply
1.3k
views
How to combine different annotation (chromosomic, genic) when using easyRNASeq (was easyRNASeq error)
RNASeq Annotation Organism biomaRt easyRNASeq RNASeq Annotation Organism biomaRt
updated 13.7 years ago by ▴ 350 • written 13.7 years ago by ★ 1.2k
0
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7
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2.7k
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question about biomaRt problem
biomaRt biomaRt
updated 13.7 years ago by ★ 2.0k • written 13.7 years ago by ★ 13k
0
votes
4
replies
2.1k
views
easyRNASeq error
Sequencing Alignment Annotation Organism BSgenome biomaRt BSgenome easyRNASeq Sequencing
13.7 years ago delhomme@embl.de ★ 1.2k
0
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2
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1.5k
views
BiomaRt error: server down?
biomaRt biomaRt
updated 13.7 years ago by ▴ 540 • written 13.7 years ago by ▴ 40
0
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2
replies
2.5k
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Goseq plot
biomaRt goseq biomaRt goseq
updated 13.7 years ago by ▴ 100 • written 13.7 years ago by ▴ 220
0
votes
0
replies
990
views
GAGE Question
probe biomaRt gage probe biomaRt gage
13.7 years ago Javerjung Sandhu ▴ 200
0
votes
5
replies
2.3k
views
Help with promoter analysis
Transcription convert biomaRt Transcription convert biomaRt
13.7 years ago Davy ▴ 20
0
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0
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1.4k
views
Goseq plot
Annotation biomaRt goseq Annotation biomaRt goseq
13.7 years ago Alpesh Querer ▴ 220
0
votes
2
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1.3k
views
BiomaRt error: server down?
biomaRt biomaRt
updated 13.7 years ago by ▴ 370 • written 13.7 years ago by ▴ 40
0
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0
replies
1.1k
views
Help to access hapmap using biomart
HapMap biomaRt HapMap biomaRt
13.8 years ago MLSC MANIPAL ▴ 120
0
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0
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1.3k
views
using easyRNASeq examples
RNASeq Annotation BSgenome convert biomaRt BSgenome IRanges DESeq easyRNASeq RNASeq
13.8 years ago delhomme@embl.de ★ 1.2k
0
votes
0
replies
988
views
bioMart
Homo sapiens biomaRt Homo sapiens biomaRt
13.8 years ago Bogdan ▴ 670
0
votes
1
reply
1.7k
views
GenomeGraphs question
SNP biomaRt ideogram GenomeGraphs SNP biomaRt ideogram GenomeGraphs
updated 13.8 years ago by ▴ 50 • written 13.8 years ago by ▴ 930
0
votes
3
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1.4k
views
[Hinxton #251937] RE: GenomicFeatures::makeTranscriptDbFromBiomart - BioMart data anomaly: for some transcripts, the cds cumulative length inferred f…
Cancer Organism biomaRt GenomicFeatures Cancer Organism biomaRt GenomicFeatures
updated 13.8 years ago by ▴ 660 • written 13.8 years ago by ★ 1.6k
0
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0
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1.5k
views
BioMart data anomaly: for some transcripts, the cds cumulative length inferred from the exon and UTR info doesn't match the "cds_length" attribute fr…
TranscriptDb biomaRt GenomicFeatures TranscriptDb biomaRt GenomicFeatures
13.8 years ago Malcolm Cook ★ 1.6k
0
votes
3
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2.0k
views
GenomicFeatures::makeTranscriptDbFromBiomart - BioMart data anomaly: for some transcripts, the cds cumulative length inferred from the exon and UTR i…
biomaRt biomaRt
updated 13.8 years ago by ▴ 660 • written 13.8 years ago by ★ 1.6k
0
votes
5
replies
1.7k
views
FW: GenomicFeatures::makeTranscriptDbFromBiomart - Error in callSuper(...) : could not find function "initRefFields"
biomaRt biomaRt
updated 13.8 years ago by ★ 7.2k • written 13.8 years ago by ★ 1.6k
0
votes
0
replies
1.2k
views
GenomicFeatures::makeTranscriptDbFromBiomart - Error in callSuper(...) : could not find function "initRefFields"
biomaRt biomaRt
13.8 years ago Malcolm Cook ★ 1.6k
0
votes
1
reply
1.7k
views
refseq to genesymbol with BiomaRt - problem occurs
GO hgu133plus2 PROcess convert biomaRt GO hgu133plus2 PROcess convert biomaRt
updated 13.8 years ago by ★ 13k • written 13.8 years ago by ▴ 240
0
votes
1
reply
2.4k
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limma topTable with gene symbols in output: annotate problem
Annotation cdf probe annotate affy limma biomaRt Annotation cdf probe annotate affy
updated 13.8 years ago by ★ 7.2k • written 13.8 years ago by ▴ 290
0
votes
2
replies
3.4k
views
Access to archived versions of Ensembl with biomaRt
biomaRt biomaRt
updated 13.8 years ago by ▴ 740 • written 13.8 years ago by ▴ 10
0
votes
1
reply
1.3k
views
Basic question about GENE 1.0 ST
biomaRt oneChannelGUI biomaRt oneChannelGUI
updated 13.9 years ago by ▴ 60 • written 13.9 years ago by ▴ 200
0
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0
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628
views
Affymetrix Gene array probe coordinates, mogene10stv1probe
probe biomaRt probe biomaRt
13.9 years ago Guest User ★ 13k
0
votes
1
reply
1.7k
views
mapping protein domains to exons
biomaRt biomaRt
updated 13.9 years ago by 21k • written 13.9 years ago by ▴ 270
0
votes
0
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1.3k
views
Difference between go, with_go and with_go_go
GO biomaRt GO biomaRt
13.9 years ago Marc Carlson ★ 7.2k
0
votes
0
replies
711
views
Bioconductor Digest, Vol 107, Issue 1
SNP Annotation probe affy biomaRt IRanges SNP Annotation probe affy biomaRt IRanges
13.9 years ago Peter Haverty ▴ 20
0
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0
replies
1.1k
views
Difference between go, with_go and with_go_go
GO biomaRt GO biomaRt
13.9 years ago chawla ▴ 190
0
votes
1
reply
1.2k
views
biomaRt querry error
biomaRt biomaRt
updated 13.9 years ago by 68k • written 13.9 years ago by ★ 1.5k
0
votes
1
reply
1.0k
views
about transcription factor binding site database
Transcription biomaRt Transcription biomaRt
updated 13.9 years ago by ★ 13k • written 13.9 years ago by ▴ 70
0
votes
2
replies
2.1k
views
getSequence with biomaRt
biomaRt biomaRt
updated 13.9 years ago by ★ 7.2k • written 13.9 years ago by ▴ 90
0
votes
0
replies
1.7k
views
Obtaining DNA sequence with biomaRt getSequence
biomaRt biomaRt
13.9 years ago mpg33@drexel.edu ▴ 90
0
votes
2
replies
1.4k
views
REACTOME biomaRt not working in R 2.14, biomaRt 2.10.0
biomaRt biomaRt
updated 13.9 years ago by ★ 8.2k • written 13.9 years ago by ▴ 30
0
votes
9
replies
2.9k
views
Attribute in snp mart to get SNP function (e.g. synonymous, nonsynonymous) ?
SNP biomaRt SNP biomaRt
updated 14.0 years ago by ★ 6.8k • written 14.0 years ago by ▴ 100
0
votes
4
replies
1.9k
views
GenomicFeatures makeTranscriptDbFromBiomart failure
TranscriptDb biomaRt TranscriptDb biomaRt
updated 14.0 years ago by ★ 11k • written 14.0 years ago by ▴ 270
0
votes
1
reply
1.0k
views
downloading GO from biomart through bioconductor
GO biomaRt GO biomaRt
updated 14.0 years ago by ★ 7.2k • written 14.0 years ago by ▴ 40
0
votes
3
replies
2.6k
views
Welcome to the "Bioconductor" mailing list
SNP biomaRt SNP biomaRt
updated 14.0 years ago by ▴ 70 • written 14.0 years ago by ▴ 100
0
votes
2
replies
1.1k
views
problem with IGH genes in org.Hs.egCHRLOC
biomaRt biomaRt
updated 14.0 years ago by ★ 7.2k • written 14.0 years ago by ▴ 80
0
votes
1
reply
1.3k
views
biomaRt query ??
biomaRt biomaRt
updated 14.1 years ago by ▴ 660 • written 14.1 years ago by ★ 1.1k
0
votes
4
replies
2.8k
views
Connecting to Uniprot Biomart using biomaRt
biomaRt biomaRt
updated 14.1 years ago by ★ 8.2k • written 14.1 years ago by ▴ 30
0
votes
3
replies
1.4k
views
biomaRt query problems- plants_mart_10
biomaRt biomaRt
updated 14.1 years ago by ★ 13k • written 14.1 years ago by ▴ 330
0
votes
3
replies
2.0k
views
Ensembl websites offline for maintenance
GO biomaRt GO biomaRt
updated 14.1 years ago by ★ 3.4k • written 14.1 years ago by ▴ 660
0
votes
3
replies
2.0k
views
[BioMart Users] biomaRt returning multiple columns out of order
Organism Arabidopsis thaliana biomaRt Organism Arabidopsis thaliana biomaRt
updated 14.1 years ago by 1.6k • written 14.1 years ago by ▴ 20
0
votes
0
replies
1.6k
views
Bioinformatics course - October 2011 Registration is now open
Microarray Cancer biomaRt ArrayExpress genomes SANTA Microarray Cancer biomaRt genomes
14.1 years ago Claude Chelala ▴ 40
0
votes
2
replies
1.6k
views
about refseq_dna in biomat
biomaRt biomaRt
updated 14.1 years ago by ▴ 400 • written 14.1 years ago by ★ 1.3k
0
votes
0
replies
1.3k
views
GetEnrichedGo term
Yeast biomaRt Yeast biomaRt
14.1 years ago Julie Zhu ★ 4.3k
0
votes
2
replies
1.4k
views
biomaRt returning multiple columns out of order
Arabidopsis thaliana biomaRt Arabidopsis thaliana biomaRt
updated 14.1 years ago by ▴ 10 • written 14.1 years ago by ▴ 20
1,082 results • Page 14 of 22
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Comment: What R/Bioconductor tools would you recommend for the analysis of sncRNA, specif by Matthew Thornton ▴ 380
WOW! Thank you so much for the information. I will do this.
Comment: "Watched Tags" are being erased rather than updated by RalphSavage99 • 0
Thanks for sharing https://github.com/Bioconductor/support.bioconductor.org/issues/112
Answer: Add additional maintainer for MOFA2 by shepherl 4.2k
These requests are best on the bioc-devel @ r-project.org or a request to maintainer @ bioconductor.org -- We would ideally need the curre…
Answer: After running samtools, the featureCounts command crashed. by Kevin Blighe ★ 4.0k
Hi Rui Tang, The "buffer overflow detected" error in featureCounts usually stems from a corrupted or malformed GTF file, often due to tr…
Answer: Problem with the TMB plot by Kevin Blighe ★ 4.0k
Hi, The linear TMB plot with no clustering suggests your variant calls may lack sample-specific discrimination, likely due to filtering ap…
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Answer: What R/Bioconductor tools would you recommend for the analysis of sncRNA, specif
Using edgeR or DESeq2 to analyze allele-specific expression?
Answer: DESeq2 design for haplotype MPRA
Answer: Failure to download resources (MeSHDb) from AnnotationHub
Answer: Failure to download resources (MeSHDb) from AnnotationHub
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