Showing : Biobase • reset
0
votes
11
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1.7k
views
'recursive default argument' error in GOENTREZID2GO
GO Biobase genefilter graph Category GO Biobase genefilter graph Category
updated 16.9 years ago by ★ 7.4k • written 16.9 years ago by ▴ 260
0
votes
6
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1.4k
views
beginner
Biobase Biobase
updated 20.9 years ago by ▴ 80 • written 20.9 years ago by ▴ 260
0
votes
4
replies
1.1k
views
Communicating gene-probe relationships to sam
SNP Biobase siggenes SNP Biobase siggenes
18.0 years ago Charles Crane ▴ 30
0
votes
5
replies
1.5k
views
PLIER affinities redux
cdf probe Biobase affy plier cdf probe Biobase affy plier
updated 18.6 years ago by ★ 1.1k • written 18.6 years ago by ▴ 60
0
votes
4
replies
1.1k
views
Recent changes to Bioconductor packages
Annotation GO Biobase Annotation GO Biobase
20.5 years ago • updated 20.4 years ago madman@jimmy.harvard.edu ▴ 850
0
votes
5
replies
1.5k
views
Errors using biocLite on Apple OS X
GUI Cancer Breast Biobase GUI Cancer Breast Biobase
17.8 years ago Steven McKinney ▴ 310
0
votes
6
replies
1.9k
views
iFlow/flowCore installation problem
Biobase flowCore iFlow Biobase flowCore iFlow
updated 13.1 years ago by ★ 8.2k • written 13.1 years ago by ▴ 60
0
votes
5
replies
1.5k
views
error coercing an exprSet to ExpressionSet
GO cdf Biobase annotate multtest affy limma RBGL GOstats Category affycoretools GO cdf
updated 17.5 years ago by ★ 7.4k • written 17.5 years ago by ▴ 890
0
votes
4
replies
1.0k
views
Which package "Multiget" belongs
Biobase reposTools affy Biobase reposTools affy
19.9 years ago nbing ▴ 30
0
votes
3
replies
998
views
beadarray example data problem 2
Biobase affy affyio beadarray Biobase affy affyio beadarray
17.5 years ago Martin Morgan 25k
0
votes
3
replies
1.0k
views
how long to calculate gcrma on 16 arrays?
mgu74av2 Biobase affy gcrma mgu74av2 Biobase affy gcrma
updated 20.7 years ago by 65k • written 20.7 years ago by ★ 1.4k
0
votes
3
replies
1.5k
views
AnnBuilder/ABPkgBuilder: lots of Errors
Annotation GO Cancer Organism Biobase annotate AnnBuilder PROcess bridge Annotation GO
updated 19.7 years ago by ★ 2.9k • written 19.7 years ago by ▴ 90
0
votes
4
replies
1.2k
views
problems with Affy vignette and affybatch objects
GO Survival cdf Biobase annotate genefilter multtest reposTools affy affydata graph GO
updated 17.5 years ago by 25k • written 17.5 years ago by ★ 2.2k
0
votes
5
replies
1.8k
views
RMA and justRMA error
Cancer cdf Biobase affy gcrma affyio Cancer cdf Biobase affy gcrma affyio
17.7 years ago Aedin Culhane ▴ 510
5
votes
7
replies
1.5k
views
Difficulty extending ExpressionSet
biobase expressionset eset
updated 5.8 years ago by 25k • written 5.8 years ago by ▴ 20
0
votes
3
replies
1.3k
views
Recent changes to Bioconductor packages
Biobase Ruuid DynDoc tkWidgets affy graph Rgraphviz AnnBuilder RBGL PROcess Biobase
21.1 years ago • updated 21.0 years ago madman@jimmy.harvard.edu ▴ 850
0
votes
4
replies
1.9k
views
Failure to load Biobase
Biobase affy limma gcrma matchprobes affyio Biobase affy limma gcrma matchprobes affyio
updated 18.0 years ago by 25k • written 18.0 years ago by ★ 2.2k
0
votes
5
replies
1.6k
views
Importing CDF file for custom array using makecdfenv
Microarray GO Survival Cancer cdf Biobase annotate genefilter affy graph makecdfenv GO
updated 17.5 years ago by ▴ 20 • written 17.5 years ago by ★ 2.2k
0
votes
5
replies
2.4k
views
Unable to install packages
Biobase Biobase
updated 12.8 years ago by ▴ 50 • written 12.8 years ago by ▴ 30
0
votes
4
replies
1.7k
views
[R-SIG-Mac] Mac os x graphviz-Rgraphviz problem
Biobase annotate geneplotter graph Rgraphviz BUS Biobase annotate geneplotter graph BUS
updated 17.3 years ago by ★ 7.4k • written 17.3 years ago by ★ 6.5k
0
votes
4
replies
1.1k
views
ABPkgBuilder Error; Again: Solved
Annotation GO Cancer Organism Biobase annotate AnnBuilder PROcess Annotation GO Cancer
updated 18.7 years ago by ★ 7.4k • written 18.7 years ago by ▴ 250
0
votes
3
replies
1.0k
views
Missing function locuslinkQuery and locuslinkBYID in annotate 1.18.0
GO hgu95av2 Biobase annotate GO hgu95av2 Biobase annotate
updated 15.6 years ago by ★ 7.2k • written 15.6 years ago by ▴ 300
0
votes
11
replies
2.7k
views
trouble hacking plotPCA
GO Survival Biobase genefilter affy affydata graph limma gcrma matchprobes affyPLM RBGL
updated 17.4 years ago by ▴ 10 • written 17.4 years ago by ★ 2.2k
0
votes
3
replies
1.3k
views
bugs in arrayQuality and marray
Normalization Biobase hexbin arrayQuality marray Normalization Biobase hexbin arrayQuality
18.4 years ago Paquet, Agnes ▴ 500
0
votes
3
replies
2.0k
views
cannot access annotation from ExpressionSet in Bioc-Devel
Annotation GO Biobase limma Annotation GO Biobase limma
updated 15.2 years ago by ▴ 810 • written 15.2 years ago by ▴ 830
0
votes
2
replies
1.0k
views
beadarray example data problem
Biobase affy affyio beadarray Biobase affy affyio beadarray
17.5 years ago Keith Satterley ▴ 450
0
votes
2
replies
1.1k
views
Web site suggestions
Biobase edd ROC Biobase edd ROC
21.9 years ago Warnes, Gregory R ▴ 460
0
votes
2
replies
1.0k
views
error with GOHyperG
drosophila2 cdf Biobase annotate genefilter multtest RBGL GOstats drosophila2 cdf RBGL
updated 17.7 years ago by ★ 7.4k • written 17.7 years ago by ▴ 10
0
votes
6
replies
1.4k
views
Error loading, on Bioconductor 1.8, exprSet generated with bioconductor 1.7
Biobase affy Biobase affy
updated 17.9 years ago by 25k • written 17.9 years ago by ▴ 500
0
votes
9
replies
1.8k
views
problem with duplicateCorrelation and ExpressionSet objects
GO Survival cdf Biobase graph limma gcrma annaffy affyPLM simpleaffy biomaRt Category
updated 17.0 years ago by ★ 7.4k • written 17.0 years ago by ★ 2.2k
0
votes
3
replies
1.4k
views
error in mas5calls() for soybean chip
Survival hu6800 cdf probe Biobase genefilter reposTools affy affydata limma gcrma made4
updated 18.0 years ago by ▴ 70 • written 18.1 years ago by ★ 2.2k
0
votes
3
replies
2.3k
views
trouble installing "affy" package
Biobase tkWidgets affy Biobase tkWidgets affy
20.3 years ago Jeffrey Chang ▴ 40
0
votes
2
replies
687
views
Problem with latest win32 package installs
GO probe Biobase affy GO probe Biobase affy
20.1 years ago Matthew Hannah ▴ 940
0
votes
2
replies
1.5k
views
problem loading affycoretools
Survival hgu95av2 Biobase Ruuid annotate genefilter multtest affydata graph limma gcrma
17.7 years ago Jenny Drnevich ★ 2.2k
0
votes
2
replies
891
views
R-2.4.0/bioconductor/darwin kernel version problem
Biobase affy Biobase affy
updated 17.4 years ago by ★ 7.4k • written 17.4 years ago by ▴ 70
0
votes
2
replies
862
views
AnnBuilder problem?
Organism Biobase annotate AnnBuilder Organism Biobase annotate AnnBuilder
updated 18.5 years ago by ▴ 780 • written 18.5 years ago by ▴ 50
0
votes
2
replies
756
views
difference between biobase and biobase2?
Biobase Biobase
updated 22.1 years ago by 6.7k • written 22.1 years ago by ▴ 530
0
votes
2
replies
1.1k
views
problem with annaffy aafFunction function
GO hgu95av2 rat2302 Biobase annotate reposTools affy annaffy GO hgu95av2 rat2302 affy
updated 18.5 years ago by 65k • written 18.5 years ago by ▴ 890
0
votes
2
replies
1.2k
views
Problems encountered using affy in R
Biobase annotate genefilter multtest ROC tkWidgets affy vsn Biobase annotate genefilter
updated 21.2 years ago by 6.7k • written 21.2 years ago by ▴ 20
0
votes
2
replies
1.2k
views
Coercing Normalized Data to exprSet
Biobase PROcess maanova Biobase PROcess maanova
21.3 years ago Barry Henderson ▴ 250
0
votes
2
replies
1.0k
views
metadata zzz.R files use delay - breaks r-devel,
Biobase Biobase
updated 19.0 years ago by ★ 5.5k • written 19.0 years ago by ▴ 140
0
votes
2
replies
925
views
bug in overview function of made4
Biobase affy marray convert made4 Biobase affy marray convert made4
updated 18.4 years ago by ▴ 510 • written 18.4 years ago by ★ 2.2k
0
votes
2
replies
1.1k
views
where can I find the GO and xtable package?
GO Biobase annotate genefilter graph RBGL GOstats GO Biobase annotate genefilter graph
updated 19.8 years ago by ★ 5.5k • written 19.8 years ago by ▴ 320
0
votes
2
replies
1.3k
views
gregmisc package-problems with BioC latest release?
Biobase annotate edd genefilter geneplotter ROC limma siggenes affyPLM marray Biobase
updated 19.5 years ago by ★ 7.4k • written 19.5 years ago by ▴ 130
0
votes
3
replies
939
views
problem with package version of rat2302 1.8.5
Annotation rat2302 Biobase reposTools affy Annotation rat2302 Biobase reposTools affy
updated 18.6 years ago by ★ 7.4k • written 18.6 years ago by ▴ 890
0
votes
2
replies
946
views
Error message when running install script.
Biobase reposTools Biobase reposTools
updated 21.4 years ago by ★ 2.9k • written 21.4 years ago by ▴ 40
0
votes
2
replies
1.0k
views
Bioconductor Install script
Biobase Biobase
updated 21.4 years ago by ★ 2.9k • written 21.4 years ago by ▴ 10
0
votes
2
replies
901
views
yeastCC installs ok, but won't load; R2.0.1
Biobase annotate Biobase annotate
19.2 years ago JDCGo@aol.com ▴ 30
0
votes
2
replies
1.2k
views
continued problems with ReadAffy
Biobase affy Biobase affy
18.2 years ago Kimpel, Mark W ▴ 890
0
votes
3
replies
1.1k
views
problem with biocLite("Biobase") -- results in looping of download
Cancer Biobase Cancer Biobase
updated 15.0 years ago by ▴ 830 • written 15.0 years ago by 25k
50 results • Page 1 of 1
Recent ...
Replies
Comment: Too many significant genes when integrating gtex and tcga by Michael Love 41k
Yes, this was one of the aspects we highlighted in the 2014 paper, and it's also in the workflow. Check these places first. Also take a st…
Answer: Too many significant genes when integrating gtex and tcga by James W. MacDonald 65k
See `?results`, in particular the lfcThreshold argument.
Comment: Once again a "Model matrix not full rank" by James W. MacDonald 65k
You already ran a temporal assay. Now you can compare each time point to the baseline. The interaction term is only applicable if you have…
Comment: Timecourse RNASeq analysis by Aurora • 0
I managed to run ImpulseDE2 as I am interested in getting significant gene changes over time. Now I would like to run deseq as well and com…
Comment: Once again a "Model matrix not full rank" by arfranco ▴ 130
But.. How to run a temporal assay?
Votes
Answer: Too many significant genes when integrating gtex and tcga
Comment: Too many significant genes when integrating gtex and tcga
A: Print Differentially Expressed Exons From Dexseq Results
stuck on unimplemented type 'list' in 'EncodeElement'
Bioconductor 3.19 is Released!
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