Showing : Biobase • reset
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Beadarray error: comparison of types not implemented
Annotation ExperimentData Cancer Biobase beadarray Annotation ExperimentData Cancer
16.6 years ago Martin Morgan 25k
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0
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1.3k
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affyPLM QC vignette is missing...
probe Biobase affy gcrma matchprobes affyPLM probe Biobase affy gcrma matchprobes
16.7 years ago Jenny Drnevich ★ 2.0k
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3
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2.3k
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cannot access annotation from ExpressionSet in Bioc-Devel
Annotation GO Biobase limma Annotation GO Biobase limma
updated 16.7 years ago by ▴ 810 • written 16.7 years ago by ▴ 830
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2
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Can't load annotations with lumi
Microarray OneChannel Annotation Normalization probe Biobase annotate genefilter affy vsn
updated 17.0 years ago by ★ 1.2k • written 17.0 years ago by ▴ 280
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3
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1.3k
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Missing function locuslinkQuery and locuslinkBYID in annotate 1.18.0
GO hgu95av2 Biobase annotate GO hgu95av2 Biobase annotate
updated 17.1 years ago by ★ 7.2k • written 17.1 years ago by ▴ 300
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1
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1.0k
views
Missing function locuslinkQuery and locuslinkBYID in annotate 1.18.0
GO hgu95av2 Biobase annotate GO hgu95av2 Biobase annotate
updated 17.1 years ago by ★ 7.2k • written 17.1 years ago by ▴ 300
0
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2
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1.1k
views
Problem installing Biobase on Solaris
Biobase Biobase
updated 17.2 years ago by 16k • written 17.2 years ago by ▴ 200
0
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2
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3.1k
views
installing problem - preprocessCore, affy on linux platform
Biobase genefilter affy vsn gcrma matchprobes preprocessCore Biobase genefilter affy vsn
updated 17.2 years ago by ★ 6.5k • written 17.2 years ago by ▴ 20
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10
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2.2k
views
subset in XPS
Normalization Biobase xps Normalization Biobase xps
updated 17.4 years ago by ★ 3.9k • written 17.4 years ago by ▴ 80
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0
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1.4k
views
Problem with oneChannelGUI
GUI Biobase affy affyio oneChannelGUI preprocessCore GUI Biobase affy affyio
17.4 years ago Luc Vallieres ▴ 20
0
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0
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914
views
Possible Bug in readExpressionSet
Cancer Biobase Cancer Biobase
17.4 years ago Martin Morgan 25k
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0
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760
views
Problem viewing vignettes : openPDF and pdfviewer and possible fix
Cancer Biobase Cancer Biobase
17.4 years ago Martin Morgan 25k
0
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1
reply
1.7k
views
GSEABase error in parsing msigdb_v2.5.xml
GO Infrastructure hgu95av2 Biobase Ruuid AnnotationDbi GO Infrastructure hgu95av2 Biobase
updated 17.5 years ago by 25k • written 17.5 years ago by ▴ 130
0
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1
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1.2k
views
Input to vsn or limma of genepix file missing 635 columns
Annotation Normalization Biobase affy vsn limma marray convert Annotation Normalization
updated 17.5 years ago by ▴ 30 • written 17.5 years ago by 53k
0
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0
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977
views
ExpressionSet class and problems with phenotype and metadata matrices
Microarray Annotation Cancer hgu95av2 Biobase annotate affy Microarray Annotation Cancer
17.7 years ago Martin Morgan 25k
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0
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1.1k
views
custom subset method / handling columns selection as logic in '...' parameter
Cancer Biobase Cancer Biobase
17.9 years ago Martin Morgan 25k
0
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2
replies
1.5k
views
Rgraphviz edge attributes can't be changed on Mac
Biobase geneplotter Rgraphviz Biobase geneplotter Rgraphviz
updated 18.0 years ago by ▴ 540 • written 18.0 years ago by ★ 1.6k
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2
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1.2k
views
newbie Q about object identity
GUI Biobase genefilter GUI Biobase genefilter
updated 18.1 years ago by 25k • written 18.1 years ago by ▴ 20
0
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1
reply
1.4k
views
beadarray: combining several beadsummary data objects
Biobase geneplotter affy affyio beadarray Biobase geneplotter affy affyio beadarray
updated 18.1 years ago by ▴ 460 • written 18.1 years ago by ▴ 70
0
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2
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1.3k
views
gDNA Cy3, cDNA Cy5
Transcription Biobase annotate Transcription Biobase annotate
updated 18.1 years ago by ★ 13k • written 18.1 years ago by ▴ 270
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4
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1.2k
views
Problem with invalid GO term in HyperGResult object - NOT solved
GO Biobase GO Biobase
updated 18.1 years ago by 68k • written 18.1 years ago by 25k
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0
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1.0k
views
problem running dev version of GCRMA
hgu133plus2 cdf Biobase affy affyio hgu133plus2 cdf Biobase affy affyio
18.1 years ago Martin Morgan 25k
0
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1
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1.1k
views
Error in .nextMethod(e1, e2) working with R2.0. in Windows
Microarray Biobase Microarray Biobase
18.2 years ago Martin Morgan 25k
0
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0
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1.2k
views
Does anyone have the same problem with new("ExpressionSet", ...) ?
Annotation Biobase Annotation Biobase
18.2 years ago Martin Morgan 25k
0
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0
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1.0k
views
Does anyone have the same problem with new("ExpressionSet", ...) ?
Annotation Biobase Annotation Biobase
18.2 years ago Wolfgang Huber ★ 13k
0
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0
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690
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Does anyone have the same problem with new("ExpressionSet", ...) ?
Cancer Biobase Cancer Biobase
18.2 years ago Seth Falcon ★ 7.4k
0
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0
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1.3k
views
Pulling significant gene ids from beadarray data
Biobase annotate affy affyio beadarray quantsmooth beadarraySNP lumi Biobase annotate
18.3 years ago Johnstone, Alice ▴ 410
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3
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1.6k
views
GDS2eSet problems
Biobase affy convert affyio GEOquery Biobase affy convert affyio GEOquery
18.3 years ago Mcmahon, Wyatt ▴ 50
0
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1
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4.0k
views
RE : create an new AnnotatedDataFrame
Annotation Survival Yeast Biobase genefilter tkWidgets marray convert arrayMagic affyio
updated 18.3 years ago by 25k • written 18.3 years ago by ▴ 30
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1
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2.1k
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create an new AnnotatedDataFrame
Survival Yeast Biobase genefilter tkWidgets marray convert arrayMagic affyio Survival
updated 18.3 years ago by 25k • written 18.3 years ago by ▴ 30
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3
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1.7k
views
GO terms not found in goTools and GO
GO Biobase annotate goTools biomaRt GO Biobase annotate goTools biomaRt
updated 18.3 years ago by ★ 7.4k • written 18.3 years ago by ▴ 80
0
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1
reply
1.6k
views
Imputation problem in aCGH
aCGH Biobase multtest impute aCGH aCGH Biobase multtest impute aCGH
18.3 years ago Benjamin Otto ▴ 830
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1
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1.7k
views
combineAffyBatch
hgu133a Biobase matchprobes hgu133a Biobase matchprobes
updated 18.4 years ago by 25k • written 18.4 years ago by ▴ 140
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1
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1.2k
views
hgu133a and gnGNF1Ba
Microarray Annotation hgu133a cdf Biobase affy PROcess Microarray Annotation hgu133a cdf
updated 18.4 years ago by ▴ 830 • written 18.4 years ago by ★ 3.4k
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1
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1.6k
views
snapCGH; export results of summarize.clones() function from aCGH
aCGH Survival Cancer Breast Biobase annotate genefilter geneplotter multtest limma aCGH
18.4 years ago Steven McKinney ▴ 310
0
votes
11
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2.5k
views
'recursive default argument' error in GOENTREZID2GO
GO Biobase genefilter graph Category GO Biobase genefilter graph Category
updated 18.4 years ago by ★ 7.4k • written 18.4 years ago by ▴ 260
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9
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2.5k
views
problem with duplicateCorrelation and ExpressionSet objects
GO Survival cdf Biobase graph limma gcrma annaffy affyPLM simpleaffy biomaRt Category
updated 18.5 years ago by ★ 7.4k • written 18.5 years ago by ★ 2.2k
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1
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1.2k
views
Problem with snprma
SNP Biobase oligo BufferedMatrix SNP Biobase oligo BufferedMatrix
updated 18.5 years ago by ★ 4.3k • written 18.5 years ago by ▴ 80
0
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2
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1.4k
views
help for siggene installation
Biobase multtest Biobase multtest
updated 18.5 years ago by ★ 7.4k • written 18.5 years ago by ▴ 60
0
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2
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1.4k
views
biomaRt, Error: ncol(result) == length(attributes) is not TRUE
Biobase annotate Rgraphviz biomaRt Biobase annotate Rgraphviz biomaRt
updated 18.6 years ago by ▴ 580 • written 18.6 years ago by ★ 1.4k
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0
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1.4k
views
marray and limma error with lmFit
Microarray Biobase DynDoc widgetTools limma arrayQuality marray convert Microarray DynDoc
18.6 years ago Paquet, Agnes ▴ 500
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0
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1.4k
views
RBGL: bfs & dfs with directed graphs
GO Biobase annotate geneplotter graph Rgraphviz annaffy RBGL convert GO Biobase graph
18.6 years ago stephen edwards ▴ 10
0
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3
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963
views
Limma: All probes come out as significant
Cancer Biobase limma Cancer Biobase limma
updated 18.6 years ago by 21k • written 18.6 years ago by ★ 1.9k
0
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1
reply
1.1k
views
Problems in AnnBuilder package function ABPkgBuilder
Annotation GO rat2302 probe Biobase annotate AnnBuilder PROcess Annotation GO rat2302
updated 18.6 years ago by ▴ 870 • written 18.6 years ago by ▴ 70
0
votes
1
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1.3k
views
topTable "resort.by" broken...
GO Survival Biobase annotate genefilter affy affydata graph gcrma matchprobes annaffy
updated 18.6 years ago by 53k • written 18.6 years ago by ★ 2.2k
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1
reply
1.7k
views
question about limma2annaffy
GO Survival Biobase annotate genefilter geneplotter affy affydata graph limma annaffy
updated 18.6 years ago by 68k • written 18.6 years ago by ★ 2.2k
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1
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1.1k
views
Normalization in davidTiling demo
Normalization GO Survival Biobase genefilter geneplotter affy vsn PROcess tilingArray GO
updated 18.7 years ago by ★ 13k • written 18.7 years ago by ★ 1.3k
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1
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1.3k
views
amigo links: gene ontology annotation for probes
Annotation GO Biobase annotate annaffy Annotation GO Biobase annotate annaffy
updated 18.7 years ago by ▴ 10 • written 18.7 years ago by ▴ 220
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2
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2.0k
views
can't load affycoretools because GOstats is broken. Can I load affycoretools without dependencies to use some functions?
GO Survival Biobase genefilter affy limma RBGL GOstats Category affyio affycoretools GO
18.8 years ago Mark W Kimpel ▴ 830
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1
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1.7k
views
beadarray and BeadStudio v.2.3.41
Biobase affy affyio beadarray Biobase affy affyio beadarray
updated 18.8 years ago by ▴ 320 • written 18.8 years ago by ▴ 70
288 results • Page 3 of 6
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Comment: Save the Date: BioC2026 by eja.gsssssswwse.r.m • 0
Que notícia incrivel sobre o BioC2026 Para quem gosta de aproveitar o conteudo online, também e possvel Baixar [snaptube versão antiga][1] …
Comment: Ensembl 115 has been released! by eja.gsssssswwse.r.m • 0
Keeping up with Ensembls latest release ensures access to cutting-edge genomic information. For those balancing research and leisure, a mob…
Answer: After running samtools, the featureCounts command crashed. by Kevin Blighe ★ 4.0k
Hi Rui Tang, The "buffer overflow detected" error in featureCounts usually stems from a corrupted or malformed GTF file, often due to tr…
Answer: Problem with the TMB plot by Kevin Blighe ★ 4.0k
Hi, The linear TMB plot with no clustering suggests your variant calls may lack sample-specific discrimination, likely due to filtering ap…
Answer: gene Set with high AUC score but no cells assigned to cell type by Kevin Blighe ★ 4.0k
Hi, You have correctly identified the issue: AUCell's automatic threshold selection is conservative by design, aiming for specificity to…
Votes
Answer: DESeq2 design for haplotype MPRA
Answer: Failure to download resources (MeSHDb) from AnnotationHub
Answer: Failure to download resources (MeSHDb) from AnnotationHub
Answer: Suppress warning in RHDF5 write
Answer: Suppress warning in RHDF5 write
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