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Asia BioCAsia Conferences Events BioC

written 2.3 years ago by Peter Hickey ▴ 750

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BioCor bioc BiocVersion

16 months ago feifan • 0

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bioc Bioconductor

updated 3.4 years ago by Hervé Pagès 16k • written 3.4 years ago by cannin ▴ 20

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R bioc

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BioC 2018 Course

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Bioc package installation rforproteomics

updated 9.0 years ago by Laurent Gatto 1.6k • written 9.0 years ago by sarahgrogan • 0

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Comment: Using tximport for kallisto aligned recount2 data by ATpoint ★ 4.7k

recount 2 does not use kallisto, does it? And recount does offer genelevel counts, so what's the point?

Comment: Seeking Advice on HTA 2.0 Microarray Data Processing with Oligo Package by Yao Lipu • 0

Thank you for your help! Your explanation was very clear and really helped me solve my issue. I truly appreciate your time and effort!

Answer: Surprising behavior for DEXseq dispersion estimate plot? by Snow • 0

Interesting adaptation of DEXseq, Elijah! Seeing those dispersion estimates makes me think about optimizing slopes, just like in [Snow Ride…

Answer: library org.Hs.eg.db failing to install by James W. MacDonald 68k

It should just install. ``` > library(BiocManager) Bioconductor version 3.20 (BiocManager 1.30.25), R 4.4.1 (2024-06-14 ucrt) W…

Comment: Surprising behavior for DEXseq dispersion estimate plot? by Elijah • 0

Thank you so much for your quick reply! I was worried if some underlying technical artifact or unusual behavior would be causing the patter…

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Answer: Handle zero effective gene length when tximport RSEM results

Handle zero effective gene length when tximport RSEM results

How to remove genes with 0 counts in tximport?

Answer: Does countsFromAbundance="lengthScaledTPM" produce un-normalized counts?

Answer: clusterProfiler, AnnotationHub, and discrepancies in GO Terms

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