Showing : BiomaRt • reset
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R: R: why biomaRt cannot extract 3UTR sequences for 1941 ENSGxxxxx ?
biomaRt biomaRt
15.5 years ago mauede@alice.it ▴ 870
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after updating biomaRt cannot connect any more
biomaRt biomaRt
updated 15.5 years ago by 21k • written 15.5 years ago by ▴ 870
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R: why biomaRt cannot extract 3UTR sequences for 1941 ENSGxxxxx ?
biomaRt biomaRt
15.5 years ago mauede@alice.it ▴ 870
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is database RefSeq achievable from any Bioconductor package
biomaRt biomaRt
15.5 years ago mauede@alice.it ▴ 870
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R: why biomaRt cannot extract 3UTR sequences for 1941 ENSGxxxxx ?
biomaRt biomaRt
updated 15.5 years ago by 21k • written 15.5 years ago by ▴ 870
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2
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why biomaRt cannot extract 3UTR sequences for 1941 ENSGxxxxx ?
biomaRt biomaRt
updated 15.5 years ago by ★ 3.4k • written 15.5 years ago by ▴ 870
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GenomeGraphs issue
affy biomaRt GenomeGraphs affy biomaRt GenomeGraphs
15.5 years ago Zoppoli, Gabriele NIH/NCI [G] ▴ 20
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annotating reads acording with position on mapping
Annotation annotate biomaRt IRanges Annotation annotate biomaRt IRanges
updated 15.5 years ago by ▴ 450 • written 15.5 years ago by ▴ 810
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pulling functional information for SNPs
SNP affy biomaRt rtracklayer SNP affy biomaRt rtracklayer
updated 15.6 years ago by ★ 7.4k • written 15.6 years ago by 68k
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pulling functional information for SNPs
SNP biomaRt SNP biomaRt
updated 15.6 years ago by 68k • written 15.6 years ago by ▴ 90
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biomaRt inconsistency: a missing annotation causes a failed query
biomaRt biomaRt
updated 15.6 years ago by ▴ 500 • written 15.6 years ago by ▴ 80
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Question about the number of human genes annotated in Pathway of REACTOAM in biomaRt
biomaRt biomaRt
15.6 years ago Gilbert Feng ▴ 300
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using biomaRt to query cds coordinates with respect to the transcript for a given gene
biomaRt biomaRt
15.6 years ago Andrew Yee ▴ 350
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where is the "getHomolog" function in biomaRt?
Annotation biomaRt Annotation biomaRt
updated 15.7 years ago by ★ 13k • written 15.7 years ago by ▴ 260
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3
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biomaRt - ensembl - proxy - NCBI36/hg18 - problems
biomaRt Vega biomaRt Vega
15.7 years ago Anthony Ferrari ▴ 110
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1.1k
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BiomaRt query
biomaRt biomaRt
updated 15.7 years ago by ★ 13k • written 15.7 years ago by ▴ 60
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Get gene structure information: use biomaRt or other annotation packages?
Annotation biomaRt Annotation biomaRt
updated 15.7 years ago by ★ 3.4k • written 15.7 years ago by ★ 4.3k
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problems when trying to use biomaRt
GUI biomaRt GUI biomaRt
updated 15.7 years ago by ★ 2.0k • written 15.7 years ago by ▴ 50
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Fwd: problems when trying to use biomaRt
GUI biomaRt GUI biomaRt
15.7 years ago Sean Davis 21k
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1.4k
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retrieveGenomicFeatureAnnotation.R file supplied with Ringo
biomaRt Ringo biomaRt Ringo
updated 15.7 years ago by ▴ 450 • written 15.7 years ago by ★ 1.3k
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5
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1.5k
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Search queries with biomaRt does not align with online queries via ensembl
GO hgu133plus2 biomaRt GO hgu133plus2 biomaRt
updated 15.7 years ago by ▴ 570 • written 15.7 years ago by ▴ 400
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911
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Search queries with biomaRt does not align with online queries via ensembl
GO hgu133plus2 biomaRt GO hgu133plus2 biomaRt
15.7 years ago Tony Chiang ▴ 570
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2
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1.1k
views
Is there a way of counting a miRNA binding sites in a target gene
miRNA biomaRt miRNA biomaRt
updated 15.8 years ago by 21k • written 15.8 years ago by ▴ 870
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Distinguish Synonymous vs. Non-synonymous SNPs
Sequencing Biostrings biomaRt Sequencing Biostrings biomaRt
15.8 years ago Michael Dondrup ▴ 550
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4
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1.7k
views
biomaRt error
biomaRt biomaRt
updated 15.9 years ago by ▴ 970 • written 15.9 years ago by ▴ 930
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4
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2.0k
views
Get genomic sequences
biomaRt rtracklayer biomaRt rtracklayer
updated 15.9 years ago by ▴ 970 • written 15.9 years ago by ▴ 50
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1
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1.8k
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problems : getting error : Error in .checkKeys(value, Lkeys(x), x@ifnotfound) : value for "GO:0010817" not found
multtest GOstats biomaRt multtest GOstats biomaRt
updated 15.9 years ago by 68k • written 15.9 years ago by ▴ 810
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Bioconductor Digest, Vol 83, Issue 4
GO biomaRt Category GO biomaRt Category
15.9 years ago Lavinia Gordon ▴ 480
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1
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1.1k
views
offline gene name conversion
biomaRt DAVIDQuery biomaRt DAVIDQuery
updated 15.9 years ago by 68k • written 15.9 years ago by ▴ 60
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15
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3.2k
views
Exon array annotation with limma?
Normalization limma biomaRt oneChannelGUI Normalization limma biomaRt oneChannelGUI
updated 15.9 years ago by ▴ 500 • written 15.9 years ago by ▴ 220
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Ringo/Starr genomeAnno Object Tips
Annotation biomaRt Ringo Annotation biomaRt Ringo
15.9 years ago Noah Dowell ▴ 410
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6
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1.9k
views
biomaRt queries: optimal size?
GO biomaRt GO biomaRt
updated 15.9 years ago by 68k • written 15.9 years ago by ★ 1.9k
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1
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1.2k
views
Ringo/Starr getProfiles function
biomaRt Ringo Starr biomaRt Ringo Starr
updated 15.9 years ago by ★ 13k • written 16.0 years ago by ▴ 410
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unexpected genes names list using getBM{biomaRt}
Alignment convert biomaRt Alignment convert biomaRt
16.0 years ago steffen@stat.Berkeley.EDU ▴ 600
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3
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1.9k
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getBM no connection but listMarts has
SNP biomaRt Vega SNP biomaRt Vega
updated 16.0 years ago by 68k • written 16.0 years ago by ▴ 370
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1.0k
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translateID in RpsiXML: [was] problems getting new intact networks from ppiDatwa
biomaRt biomaRt
16.0 years ago Tony Chiang ▴ 570
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937
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ChIPpeakAnno: getAnnotation using biomart 54
Annotation biomaRt Annotation biomaRt
16.0 years ago Julie Zhu ★ 4.3k
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ChIPpeakAnno Biomart Archive annotation querying
Annotation GO AnnotationData BSgenome biomaRt BSgenome ChIPpeakAnno Annotation GO biomaRt
16.0 years ago Khademul Islam ▴ 30
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1.8k
views
ChIPpeakAnno Biomart annotation
Annotation GO AnnotationData BSgenome biomaRt BSgenome ChIPpeakAnno Annotation GO biomaRt
updated 16.0 years ago by ★ 4.3k • written 16.0 years ago by ▴ 30
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1
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2.9k
views
installation of org.Hs.eg.db
biomaRt biomaRt
updated 16.0 years ago by ★ 1.1k • written 16.0 years ago by ▴ 810
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1
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1.2k
views
R: R: BioMart error occurred again
miRNA biomaRt miRNA biomaRt
updated 16.0 years ago by ▴ 600 • written 16.0 years ago by ▴ 870
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3
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2.0k
views
R: Can an R script be run through a cron job ?
miRNA PROcess biomaRt miRNA PROcess biomaRt
updated 16.0 years ago by ★ 1.3k • written 16.0 years ago by ▴ 870
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3
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1.2k
views
R: BioMart error occurred again
biomaRt biomaRt
16.0 years ago mauede@alice.it ▴ 870
0
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4
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2.0k
views
problem connecting to bioMart - NOT proxy error
biomaRt biomaRt
updated 16.0 years ago by ★ 7.4k • written 16.0 years ago by ★ 2.0k
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6
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1.7k
views
hs.Mm.inp.db problem
biomaRt biomaRt
16.0 years ago Iain Gallagher ▴ 930
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5
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3.6k
views
problems in installing biomart
biomaRt biomaRt
updated 16.0 years ago by ▴ 450 • written 16.0 years ago by ▴ 810
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2
replies
1.7k
views
biomaRt- incorrect number of transcripts
biomaRt biomaRt
updated 16.0 years ago by ▴ 660 • written 16.0 years ago by ▴ 600
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3
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1.8k
views
Error using makeGeneRegion/getBM/listFilters, argument 'what' contains an invalid value: type
biomaRt biomaRt
updated 16.0 years ago by ▴ 600 • written 16.0 years ago by ▴ 90
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0
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772
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Synonymous / nonSynonymous utility
biomaRt biomaRt
16.0 years ago Paul Leo ▴ 970
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0
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959
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Query ERROR: caught BioMart::Exception
biomaRt biomaRt
16.0 years ago mauede@alice.it ▴ 870
1,082 results • Page 17 of 22
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