Showing : Biomart • reset
0
votes
3
replies
105
views
Issues with downloading biomaRt - SeqInfo and S4 Vectors
S4Vectors biomaRt Seqinfo
updated 4 days ago by 68k • written 4 days ago by • 0
0
votes
1
reply
184
views
News: Ensembl 115 has been released!
ensembl ensembldb biomaRt
written 8 weeks ago by • 0
0
votes
0
replies
168
views
Extract snp information from genomic regions with biomaRt -> "oaries_snp"
biomaRt
updated 9 weeks ago by 68k • written 9 weeks ago by • 0
1
vote
3
replies
1.4k
views
News: Ensembl 114 / Ensembl Genomes 61 has been released!
biomaRt ensembldb
written 6 months ago by ▴ 30
1
vote
1
reply
645
views
Biomart server error
biomaRt BioMartGOGeneSets
updated 5 months ago by 68k • written 5 months ago by • 0
0
votes
3
replies
825
views
getBM from biomaRt inconsistencies found with .gtf files across multiple species
.gtf biomaRt Ensembl
updated 7 months ago by ★ 6.6k • written 7 months ago by ▴ 20
0
votes
4
replies
2.2k
views
Ensembl site unresponsive via biomaRt
biomaRt
updated 6 months ago by • 0 • written 7 months ago by • 0
3
votes
5
replies
2.0k
views
Differential expression of protein coding ENSGs (Ensembl IDs) | When to biomaRt?
limma edgeR biomaRt
updated 9 months ago by 68k • written 9 months ago by ▴ 10
0
votes
2
replies
1.6k
views
Error using useMart or useEnsembl
biomaRt
updated 9 months ago by 68k • written 9 months ago by • 0
0
votes
4
replies
1.7k
views
Biomart and ensembl not working?
ensembldb biomaRt
updated 10 months ago by 68k • written 10 months ago by • 0
3
votes
9
replies
1.9k
views
Different annotation packages (org.Mm.eg.db, EnsDb.Mmusculus.v79, BiomaRt) returning drastically different numbers of transcripts
AnnotationDbi EnsDb.Mmusculus.v79 biomaRt org.Mm.eg.db
updated 9 months ago by • 0 • written 10 months ago by • 0
4
votes
9
replies
2.9k
views
biomaRt rnorvegicus_gene_ensembl not available anymore
Rattus_norvegicus biomaRt
updated 11 months ago by 68k • written 12 months ago by ▴ 20
0
votes
0
replies
907
views
News: Ensembl 113 has been released
ensembl ensembldb mart biomaRt
12 months ago Ensembl_Jorge • 0
0
votes
1
reply
768
views
BiomaRt - improved access to Ensembl ?
biomaRt
updated 13 months ago by ★ 6.6k • written 13 months ago by • 0
2
votes
2
replies
1.7k
views
Issues with retrieving Zea mays genes dataset: biomaRt error: looks like we're connecting to incompatible version of BioMart.
biomaRt
13 months ago 2044291597 • 0
1
vote
3
replies
1.8k
views
502 error biomaRt getLDS()
ensembldb biomaRt
updated 14 months ago by 68k • written 21 months ago by ▴ 10
1
vote
4
replies
1.8k
views
BiomaRt Possible Ensembl SSL connectivity problems detected.
PureCN biomaRt
updated 12 months ago by • 0 • written 14 months ago by • 0
1
vote
4
replies
1.4k
views
How to Query Only SNPs from the biomaRt Variation Database
biomaRt
15 months ago kschecht • 0
2
votes
8
replies
3.7k
views
biomaRt getLDS error
biomaRt
15 months ago mark.dunning ▴ 20
1
vote
2
replies
1.5k
views
Issues with retrieving mouse SNP dataset: biomaRt error: looks like we're connecting to incompatible version of BioMart.
biomaRt
16 months ago Svitlana ▴ 10
0
votes
0
replies
613
views
BiomaRt attribute "description" doesn't return NCBI's gene summary anymore
biomaRt
17 months ago Reese • 0
0
votes
2
replies
1.0k
views
Errors in chromosome annotation-biomaRt
org.Rn.eg.db biomaRt
18 months ago • updated 17 months ago landenshanie ▴ 40
0
votes
0
replies
545
views
Minor allele data from grch38 giving NAs from getBM ?
BioMartGOGeneSets allele_freq biomaRt getBM
18 months ago Abiologist • 0
1
vote
0
replies
986
views
News: Ensembl 112 has been released.
ensembldb biomaRt ensemblrelease
18 months ago Aleena_Ensembl ▴ 30
1
vote
3
replies
934
views
Error retrieving ensembl gene id using biomaRt...
biomaRt
updated 19 months ago by 68k • written 19 months ago by ▴ 30
2
votes
2
replies
1.5k
views
OrgDb for maize
clusterProfiler OrgDb biomaRt Zea_mays
updated 19 months ago by 68k • written 19 months ago by • 0
0
votes
1
reply
819
views
Multiple affymatrix IDs mapping to a single gene name
biomaRt
updated 19 months ago by 68k • written 19 months ago by • 0
0
votes
1
reply
1.9k
views
error in mapIds function
mapIds biomaRt
updated 20 months ago by 700 • written 20 months ago by • 0
0
votes
2
replies
1.5k
views
Issue with BiomaRt's getLDS: Query ERROR: caught BioMart::Exception::Query: returning undef ... missing attributes for your exportable
biomaRt
21 months ago eefernan5 • 0
3
votes
3
replies
16k
views
How to find rsID with biomaRt in R
biomaRt
updated 21 months ago by 68k • written 4.7 years ago by ▴ 10
0
votes
1
reply
684
views
biomaRt issue
biomaRt
updated 21 months ago by ★ 6.6k • written 21 months ago by • 0
1
vote
5
replies
2.2k
views
BiomaRt download data error
biomaRt
updated 21 months ago by ★ 6.6k • written 21 months ago by • 0
6
votes
9
replies
4.1k
views
biomaRt has encountered an unknown server error.
biomaRt host useEnsembl
updated 21 months ago by • 0 • written 21 months ago by • 0
1
vote
1
reply
2.1k
views
Error with biomaRt
biomaRt
updated 22 months ago by ★ 6.6k • written 22 months ago by • 0
4
votes
2
replies
1.3k
views
Enrichement with clusterProfiler and biomart
biomaRt clusterProfiler Zea_mays
updated 22 months ago by ★ 4.1k • written 22 months ago by • 0
2
votes
2
replies
1.5k
views
biomaRt error message: Error in textConnection(bmResult) : invalid 'text' argument
biomaRt
22 months ago bd2000 ▴ 30
1
vote
0
replies
768
views
News: Ensembl 111 has been released
Ensembl biomaRt
22 months ago Benjamin ▴ 30
0
votes
2
replies
1.2k
views
Problem with loading ensembl version 105.
biomaRt
23 months ago RC • 0
0
votes
1
reply
2.1k
views
biomaRt_getBM_Failed to collect lazy table
getBM biomaRt
updated 23 months ago by 68k • written 23 months ago by • 0
0
votes
3
replies
1.8k
views
Obtaining rsIDs with ENSG and variant ID information
rsid biomaRt
updated 23 months ago by ★ 3.4k • written 23 months ago by ▴ 30
4
votes
12
replies
2.4k
views
Ensembl down???
biomaRt
23 months ago bas_work ▴ 30
3
votes
2
replies
1.1k
views
biomaRtl returns multiple GO terms when filtering on a single GO term in ensembl database
ensembl biomaRt
24 months ago • updated 23 months ago henrydionne ▴ 10
1
vote
2
replies
2.4k
views
How to find stop codons for a list of genes
stopcodon biomaRt
24 months ago Marek Gierlinski ▴ 30
0
votes
10
replies
1.9k
views
Unable to locate BioMart dataset for Dog10K_Boxer_Tasha
R BioMart biomaRt
24 months ago • updated 20 months ago ScafioRuo • 0
12
votes
10
replies
16k
views
biomaRt not working - lazy table error
error lazy R biomaRt table
updated 20 months ago by • 0 • written 2.0 years ago by ▴ 20
0
votes
3
replies
1.2k
views
determine if R package or it's dependencies functionality require internet access
biomaRt
updated 2.0 years ago by 53k • written 2.0 years ago by • 0
1
vote
4
replies
1.4k
views
biomaRt code/getBM function no longer importing 'coding' sequence via seqType argument, "Invalid attribute(s): coding" error
biomaRt
2.1 years ago andrew.b.kleist ▴ 10
7
votes
6
replies
8.9k
views
Conversion of UniProt to Ensembl
biomaRt ensembldb UniProt.ws
updated 2.1 years ago by 700 • written 3.3 years ago by ▴ 20
0
votes
2
replies
966
views
Biomart - upstream region of 'coding'
biomaRt
updated 2.2 years ago by ★ 6.6k • written 2.2 years ago by ▴ 20
0
votes
0
replies
824
views
Getting CDS 5'/CDS3' incomplete flags info from ENSEMBL using biomaRt
biomaRt
2.2 years ago ali.oghabian • 0
1,082 results • Page 1 of 22
Recent ...
Replies
Comment: After running samtools, the featureCounts command crashed. by surprised.swordtail.tlfy • 0
Hey Rui, that's a tricky error! Kevin's suggestion about the GTF file makes total sense. I've had similar issues with file paths in WSL cau…
Comment: How to reverse complement some elements of a DNAStringSet by Lenson • 0
Hey, thanks for the insightful post! I totally get what you mean about the learning process. Sometimes you try a new approach and it just d…
Comment: Research and Service Group Leader positions in AI in Biology at EMBL by eja.gssssswssswwse.r.m • 0
For mobile gamers seeking innovative experiences, free download ck999 game brings engaging gameplay right to your device. Whether exploring…
Comment: What R/Bioconductor tools would you recommend for the analysis of sncRNA, specif by Matthew Thornton ▴ 380
WOW! Thank you so much for the information. I will do this.
Comment: "Watched Tags" are being erased rather than updated by RalphSavage99 • 0
Thanks for sharing https://github.com/Bioconductor/support.bioconductor.org/issues/112
Votes
Answer: What R/Bioconductor tools would you recommend for the analysis of sncRNA, specif
Using edgeR or DESeq2 to analyze allele-specific expression?
Answer: DESeq2 design for haplotype MPRA
Answer: Failure to download resources (MeSHDb) from AnnotationHub
Answer: Failure to download resources (MeSHDb) from AnnotationHub
Awards • All
Scholar to shepherl 4.2k
Scholar to James W. MacDonald 68k
Popular Question to Daniel Cameron ▴ 40
Popular Question to Peter Hickey ▴ 760
Popular Question to edward.esiribloom • 0
Locations • All
Austria, 1 minute ago
The city by the bay, 12 minutes ago
Austria, 21 minutes ago
United States, 1 hour ago
Vietnam, 2 hours ago
Traffic: 701 users visited in the last hour
Content Search
Users
Tags
Badges
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6