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Comment: How to convert transcript counts to gene counts in R? by ben • 0

Simply summing transcripts by gene is sufficient for use with DESeq2. [sprunki clicker][1] [1]: https://sprunkiclicker.com/

Answer: EuroBioC2024 abstract submission is open! by Ali • 0

[Promo products][1] are a smart way to boost visibility, especially with exciting updates like *News: EuroBioC2024 abstract submission is o…

Answer: ROAST for small sets by Gordon Smyth 52k

The p-values from `mroast` will be the same (up to sampling variability associated with random rotations) regardless of whether you test al…

Comment: FlowSOM library requires igraph but igraph does not install by Szabolcs • 0

The R/igraph Installation FAQ covers most issues: https://r.igraph.org/articles/installation-troubleshooting.html

Comment: edgeR::cpm() results in negative values from raw counts of 0 by Kinnary ▴ 20

Thank you very much for the vis suggestion!

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Answer: ROAST for small sets

A: conceptual question about FDR, FDR adjusted p-value and q-value

Comment: edgeR::cpm() results in negative values from raw counts of 0

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Scholar to Gordon Smyth 52k