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CATALYST
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653
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Catalyst::cluster function does NOT produce the same results when setting seed
visua
Visualization
CATALYST
22 months ago
elefth.pavlos
▴ 40
0
votes
2
replies
1.1k
views
Invalid spillover matrix with values greater than 1
CATALYST
updated 2.2 years ago by
SamGG
▴ 360 • written 3.2 years ago by
David
• 0
2
votes
3
replies
3.8k
views
Keep getting this error "Warning: unable to access index for repository"?
CATALYST
updated 2.4 years ago by
Hervé Pagès
16k • written 2.4 years ago by
Hyoann
▴ 20
0
votes
0
replies
819
views
data truncation with sce2fcs()
CATALYST
2.6 years ago
Shaun
• 0
2
votes
2
replies
1.7k
views
Unable to download CATALYST
CATALYST
3.3 years ago
David
• 0
1
vote
3
replies
1.6k
views
singlecellexperiments markers after clustering
CATALYST
SingleCellExperiment
updated 4.8 years ago by
helucro
▴ 70 • written 4.8 years ago by
achaillon
• 0
2
votes
2
replies
1.9k
views
Updating package CATALYST
CATALYST
cytofWorkflow
updated 5.9 years ago by
Martin Morgan
25k • written 5.9 years ago by
Brent.OCarrigan
• 0
0
votes
1
reply
1.5k
views
Error after assignPrelim(), CyTOF compenstation
CATALYST
flowCore
assignPrelim
Error in vapply
read.FCS
6.7 years ago
j.krop
• 0
8 results • Page
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Comment: Best practice for handling large data (matrix with >2^31-1 non-zero elements) in
by
James W. MacDonald
68k
Oh. ``` > z <- read10xCounts(c(tmpdir, tmpdir), mtx.class = "SVT_SparseMatrix", delayed = TRUE) > class(counts(z)) [1] "DelayedMatrix" att…
Comment: Best practice for handling large data (matrix with >2^31-1 non-zero elements) in
by
James W. MacDonald
68k
That's weird. Using the example data works for me. ``` > example(read10xCounts) rd10xC> # Mocking up some 10X genomics output. rd10xC> ex…
Comment: Join BOC Sciences at Drug Discovery Chemistry
by
teamardigen
• 0
Sounds like an exciting event for anyone passionate about small molecule innovation. The focus on discovery and optimization really drives …
Comment: Best practice for handling large data (matrix with >2^31-1 non-zero elements) in
by
dan.gatti
• 0
I am, but perhaps I'm not understanding how it should work. > sse = DropletUtils::read10xCounts(curr_files[1], mtx.class = 'SVT_Sparse…
Comment: Best practice for handling large data (matrix with >2^31-1 non-zero elements) in
by
James W. MacDonald
68k
Did you use the development version as Aaron suggested? There is an argument to read the market matrix file directly into an `SVT_SparseMat…
Votes
DESeq2 for candidate gene analysis
Join BOC Sciences at Drug Discovery Chemistry
Drug datasets for RNA-seq
Comment: Check removeBatchEffect effectiveness
Comment: Streamlining the computing time for MiloDE p-value correction in large dataset?
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