Showing : Cancer • reset
0
votes
5
replies
1.6k
views
rtracklayer error?
Cancer rtracklayer Cancer rtracklayer
12.2 years ago Janet Young ▴ 740
0
votes
4
replies
2.2k
views
DexSeq extracols option
RNASeq Microarray Genetics Annotation Normalization Infrastructure Cancer probe limma
updated 12.2 years ago by ★ 1.9k • written 12.2 years ago by ▴ 40
0
votes
1
reply
1.2k
views
Fwd: Conservative results using DEXSeq
Cancer Ovarian DEXSeq DESeq2 Cancer Ovarian DEXSeq DESeq2
updated 12.2 years ago by ★ 13k • written 12.2 years ago by ★ 1.1k
0
votes
1
reply
1.3k
views
convert IDs in a data frame?
GO Infrastructure Cancer GO Infrastructure Cancer
updated 12.2 years ago by ★ 7.2k • written 12.2 years ago by 16k
0
votes
14
replies
4.4k
views
Trimming of partial adaptor sequences
Sequencing Cancer Biostrings Sequencing Cancer Biostrings
12.2 years ago Taylor, Sean D ▴ 250
0
votes
1
reply
1.7k
views
Way to extract population specific genotype from 1000 genome
SNP Cancer SNP Cancer
updated 12.2 years ago by 6.7k • written 12.2 years ago by ▴ 260
0
votes
2
replies
1.5k
views
limma for homemade microarray - question on NAs and multiple probes for one gene
Microarray Normalization GO Network Cancer probe limma Microarray Normalization GO probe
updated 12.2 years ago by 53k • written 12.3 years ago by ★ 3.0k
0
votes
14
replies
3.9k
views
pd.hugene.2.0.st missing normgene->exon mappings
Cancer probe Cancer probe
updated 12.3 years ago by 68k • written 12.3 years ago by ▴ 910
0
votes
0
replies
1.7k
views
Error in clusterProfiler package with function \"setReadable<-\"
GO Cancer Rgraphviz clusterProfiler DOSE GO Cancer Rgraphviz clusterProfiler DOSE
12.3 years ago Martin Morgan 25k
0
votes
3
replies
2.0k
views
Merging two data frame
Cancer Cancer
updated 12.3 years ago by ★ 13k • written 12.3 years ago by ▴ 260
0
votes
0
replies
1.5k
views
BioC 2013, July 17 (Developer Day) 18-19: 'Early' registration deadline July 1
Cheminformatics Visualization Cancer Ovarian DEXSeq minfi DESeq2 BaseSpaceR epivizr minfi
12.3 years ago Martin Morgan 25k
0
votes
3
replies
2.2k
views
Regarding extraction of 3' and 5'UTRs and exonic region of a gene.
Cancer Cancer
updated 12.3 years ago by 16k • written 12.3 years ago by ▴ 60
0
votes
0
replies
1.6k
views
Job opening: Staff Scientist – Computational Biology and Bioinformatics – Massachusetts General Hospital & Harvard Medical School
Sequencing Microarray Cancer Sequencing Microarray Cancer
12.3 years ago Wittner, Ben ▴ 290
2
votes
4
replies
3.2k
views
makePdInfoPackage for Primeview arrays
BiocViews Annotation Cancer Organism cdf probe affy biocViews BiocViews BiocViews Cancer
updated 12.3 years ago by ★ 3.9k • written 12.3 years ago by ▴ 140
0
votes
0
replies
1.2k
views
number of variable in svm plot
Cancer Cancer
12.3 years ago Guest User ★ 13k
0
votes
1
reply
985
views
why could I only get two different expressed genes by Limma?
Microarray Annotation Cancer Microarray Annotation Cancer
updated 12.3 years ago by ▴ 310 • written 12.3 years ago by ▴ 10
2
votes
5
replies
1.7k
views
obtaining a complete global alignment via pairwiseAlignment
Alignment GO Cancer BSgenome BSgenome Alignment GO Cancer BSgenome BSgenome
updated 12.3 years ago by 25k • written 12.3 years ago by ★ 13k
0
votes
0
replies
1.3k
views
BioC 2013: Talks and Workshops
Visualization Cancer Ovarian DEXSeq DESeq2 BaseSpaceR Visualization Cancer Ovarian DEXSeq
12.3 years ago Martin Morgan 25k
0
votes
2
replies
1.3k
views
Rat St gene array 2.0
Cancer cdf Cancer cdf
updated 12.3 years ago by ▴ 10 • written 12.3 years ago by ▴ 170
0
votes
2
replies
4.4k
views
From location to get the SNP rs ID
SNP Cancer SNPlocs ASSIGN SNP Cancer SNPlocs ASSIGN
updated 12.4 years ago by 16k • written 12.4 years ago by ▴ 970
0
votes
1
reply
1.1k
views
Semantics of GenomicRanges gaps()
Cancer GenomicRanges Cancer GenomicRanges
updated 12.4 years ago by ★ 11k • written 12.4 years ago by 16k
0
votes
0
replies
819
views
Bioc 2013 Conference in Seattle, July 18-19 -- Updates
Cancer Cancer
12.4 years ago Martin Morgan 25k
0
votes
0
replies
1.7k
views
How to analyze Agilent DNA Methylation Microarray Analysis
Clustering Cancer Clustering Cancer
12.4 years ago Guest User ★ 13k
0
votes
0
replies
1.1k
views
Analyzing Agilent Human DNA Methylation Microarray
Pathways Cancer Pathways Cancer
12.4 years ago Arpit Jain ▴ 10
0
votes
0
replies
1.1k
views
Reminder: Course: Intermediate R / Bioconductor for High-Throughput Sequence Analysis, 28-29 May, Seattle
Cancer Cancer
12.4 years ago Martin Morgan 25k
0
votes
0
replies
1.1k
views
Bug when running Gviz::GenomeAxisTrack and highlighting region in axis
Cancer Gviz Cancer Gviz
12.4 years ago Alvaro J. González ▴ 80
0
votes
2
replies
1.2k
views
Bug when running Gviz::GenomeAxisTrack and highlighting region in axis
Cancer Gviz Cancer Gviz
updated 12.4 years ago by ★ 1.6k • written 12.4 years ago by ▴ 80
0
votes
0
replies
2.0k
views
ComBat using SVA and bladderbatch package
Cancer sva Cancer sva
12.4 years ago Guest User ★ 13k
0
votes
1
reply
1.3k
views
edgeR: Using ratios (translational efficiencies) as input
RNASeq GO Cancer limma edgeR RNASeq GO Cancer limma edgeR
updated 12.4 years ago by ▴ 210 • written 12.5 years ago by ▴ 80
0
votes
0
replies
1.9k
views
Job opening, KCL Breakthrough Breast Cancer Research Unit
Sequencing Network Cancer Breast Sequencing Network Cancer Breast
12.4 years ago Lawler, Katherine ▴ 40
0
votes
0
replies
1.1k
views
Course: Intermediate R / Bioconductor for High-Throughput Sequence Analysis, 28-29 May, Seattle
Cancer Cancer
12.5 years ago Martin Morgan 25k
0
votes
3
replies
1.4k
views
Deleting object rows while looping - II
Coverage Alignment Cancer PROcess Coverage Alignment Cancer PROcess
updated 12.5 years ago by ★ 13k • written 12.5 years ago by 16k
0
votes
0
replies
940
views
edgeR asimmetry in miRNA experiment
miRNA Cancer edgeR miRNA Cancer edgeR
12.5 years ago Gordon Smyth 53k
0
votes
0
replies
1.1k
views
edgeR asimmetry in miRNA experiment
Cancer edgeR Cancer edgeR
12.5 years ago alessandro.guffanti@genomnia.com ▴ 330
0
votes
0
replies
844
views
Bioc 2013 Conference in Seattle, July 18-19 -- Updates
Cancer Cancer
12.5 years ago Martin Morgan 25k
0
votes
0
replies
1.3k
views
Affymetrix HTA 2 array analysis
Cancer Breast Cancer Breast
12.5 years ago Steven McKinney ▴ 310
0
votes
3
replies
2.1k
views
error and warning message with blocked samples with Limma
GO Cancer mouse4302 limma GO Cancer mouse4302 limma
updated 12.5 years ago by 53k • written 12.5 years ago by ★ 2.0k
0
votes
0
replies
1.4k
views
stringDist ?
Cancer Biostrings Cancer Biostrings
12.5 years ago Hervé Pagès 16k
0
votes
0
replies
1.6k
views
Biostatistician position in London
Cancer genomes Cancer genomes
12.5 years ago Kathi Zarnack ▴ 110
0
votes
5
replies
5.7k
views
Finding mismatches between reads and reference sequence
Infrastructure Cancer BSgenome BSgenome Infrastructure Cancer BSgenome BSgenome
updated 12.5 years ago by ▴ 30 • written 12.5 years ago by 16k
0
votes
2
replies
1.8k
views
Limit on number of sequence files for forging a BSgenome
GO Cancer BSgenome BSgenome genomes GO Cancer BSgenome BSgenome genomes
12.5 years ago Hervé Pagès 16k
0
votes
0
replies
1.9k
views
Bioconductor Digest, Vol 121, Issue 29
miRNA Annotation Normalization Visualization Clustering Infrastructure Cancer BSgenome vsn
12.5 years ago Matthew Thornton ▴ 380
0
votes
2
replies
3.0k
views
[R] Error in setMethod("combine"... was - Error when installing globaltest package
Infrastructure Cancer Biobase tkWidgets globaltest BiocInstaller BiocGenerics Cancer
updated 12.5 years ago by 25k • written 12.5 years ago by ▴ 40
0
votes
2
replies
850
views
Estimate how much a factor contributes to the variation
Microarray Cancer Microarray Cancer
updated 12.6 years ago by ★ 4.1k • written 12.6 years ago by ▴ 10
0
votes
2
replies
1.6k
views
ChIPpeakAnno query
Microarray Annotation Cancer Prostate annotate affy convert biomaRt ChIPpeakAnno Cancer
updated 12.6 years ago by ▴ 10 • written 12.6 years ago by ★ 4.3k
0
votes
5
replies
2.2k
views
edgeR for data combined from different studies and/or platforms
Sequencing Cancer edgeR Sequencing Cancer edgeR
updated 12.6 years ago by ★ 7.9k • written 12.6 years ago by ★ 13k
0
votes
0
replies
1.0k
views
NCI 60 gene expression status
Cancer Cancer
12.6 years ago Alyaa Mahmoud ▴ 440
0
votes
0
replies
968
views
BioC2013, July 18-19 (Developer Day July 17), Seattle: Registration Open
Cancer Cancer
12.6 years ago Martin Morgan 25k
0
votes
0
replies
2.5k
views
Bioconductor Digest, Vol 121, Issue 13
RNASeq Microarray Normalization GO Classification Clustering Cancer Mus musculus probe GO
12.6 years ago Matthew Thornton ▴ 380
0
votes
3
replies
2.0k
views
QuasiSeq vs DSS
RNASeq Cancer edgeR DSS RNASeq Cancer edgeR DSS
updated 12.6 years ago by ★ 7.9k • written 12.6 years ago by ★ 2.0k
1,555 results • Page 6 of 32
Recent ...
Replies
Comment: PCA subset of genes vs DE by Ben • 0
PCA evaluates separation according to your input. The subset of genes you used may be entirely identical in terms of expression, indicatin…
Comment: Problem with MakeTxDbFromGFF by Ben • 0
Wow can't believe he can really answer this [speed stars][1] [1]: https://speed-stars.co
Comment: Help with defining groups by Phinney, Brett ▴ 10
I got it working , thank you!!!
Comment: Check removeBatchEffect effectiveness by massimo • 0
I would kindly ask for additional support. When not including the design_timepoint argument in removeBatchEffect and thus keeping the inter…
Comment: Error Loading Experiment from SimBenchData Package by ksankaran • 0
Aha, that was it! The object was class Seurat, but I didn't have it installed. After installing, everything works as expected.
Votes
Comment: Check removeBatchEffect effectiveness
Gene expression associated with continuous (quantitative) traits (Limma/edgeR/correlation)
Answer: Error Loading Experiment from SimBenchData Package
Comment: incomplete imputation of missing values with LEA impute() function
Answer: Expected memory usage for analyzing large single-cell seq datasets (> 450,000 ce
Awards • All
Popular Question to Peter • 0
Popular Question to Travis • 0
Popular Question to James W. MacDonald 68k
Popular Question to Gordon Smyth 53k
Popular Question to shepherl 4.2k
Locations • All
United States, 21 minutes ago
Poland, 2 hours ago
Denmark, 2 hours ago
WEHI, Melbourne, Australia, 3 hours ago
The city by the bay, 6 hours ago
Traffic: 1620 users visited in the last hour
Content Search
Users
Tags
Badges
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6