Showing : Celegans • reset
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Failed Construction of DESEQDataSet Object: C.Elegans
Celegans DESeq2 dds Errorinseq_len(length(idx)-1)
updated 18 months ago by 65k • written 18 months ago by • 0
1
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1
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973
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Fail to install BSgenome and library
BSgenome Celegans
updated 2.1 years ago by 16k • written 2.1 years ago by • 0
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2
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1.4k
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Error in useMart while using a dataset in biomaRt
biomaRt bioconductor celegans annotation
updated 6.3 years ago by ★ 6.5k • written 6.3 years ago by • 0
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1
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948
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question regarding BSGenome/Biostrings
celegans Biostrings celegans Biostrings
updated 15.5 years ago by 16k • written 15.5 years ago by ▴ 210
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978
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concurrent R-release & R-devel versions -- bioc also? [was Re: from TF DNA binding motif to downstream genes?]
Transcription GO celegans BSgenome Biostrings BSgenome IRanges Transcription GO celegans
updated 14.3 years ago by 21k • written 14.3 years ago by ★ 1.1k
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2
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758
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Celegans.db_2.3.5: Wormbase version
celegans affy convert celegans affy convert
updated 13.7 years ago by ★ 7.2k • written 13.7 years ago by ★ 4.3k
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2
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1.6k
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Gviz: Add label/title to GenomeAxisTrack
Gviz celegans
updated 6.3 years ago by ▴ 730 • written 6.3 years ago by ▴ 10
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0
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703
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read.affybatch fails with DrosGenome1 chips
Microarray Cancer celegans drosgenome1 affy Microarray Cancer celegans drosgenome1 affy
20.6 years ago James W. MacDonald 65k
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875
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Limma: different numbers of duplicated spots
celegans celegans
17.1 years ago Gordon Smyth 50k
9 results • Page 1 of 1
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Comment: Numerical differences in DESeq2 output depending on different design matrix cons by Ken C • 0
Hi Michael, thanks a lot for your prompt reply! Not sure if this is appropriate or if you are the right person to ask -- is there anything…
Comment: Numerical differences in DESeq2 output depending on different design matrix cons by Ken C • 0
Well, if I look at genes with baseMean>50, then the relative absolute difference in log2FoldChange (say over the absolute log2FoldChange of…
Comment: all variables in design formula must be columns in colData (Deseq2) error by Galina • 0
Thank you for advice, you mean I need to add: countdata_rat <- data.frame(condition = as.factor(METADATA_RAT$treatment)) and total: dds_…
Answer: all variables in design formula must be columns in colData (Deseq2) error by ATpoint ★ 4.1k
Your code is poorly readable. Suggest you select and then highlight with markdown using the `10101` button. Generally, colData(dds) must…
Answer: Subsetting RNAseq data | voomaByGroup() by Gordon Smyth 50k
Judging from your MDS plot, cell types 1 and 2 look radically different, so it would make perfect sense to analyse them separately. There's…
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Answer: Error while installing BiocManager::install("org.Vdahliae.eg.db")
Comment: How can I create a eigencorplot of pca created from deseq2 object with PCAtools
Answer: Importing a GraphNEL into Cytoscape with RCy3 with error: "Error in cyrestPUT(pa
Answer: Importing a GraphNEL into Cytoscape with RCy3 with error: "Error in cyrestPUT(pa
Rsubread counting peaks ATACseq
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