Bioconductor Celegans

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Celegans DESeq2 dds Errorinseq_len(length(idx)-1)

updated 18 months ago by James W. MacDonald 65k • written 18 months ago by Enzo.Scifo • 0

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965

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BSgenome Celegans

updated 2.1 years ago by Hervé Pagès 16k • written 2.1 years ago by Tsung-Han • 0

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1.4k

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biomaRt bioconductor celegans annotation

updated 6.3 years ago by Mike Smith ★ 6.5k • written 6.3 years ago by clarisbaby • 0

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946

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celegans Biostrings celegans Biostrings

updated 15.5 years ago by Hervé Pagès 16k • written 15.5 years ago by Elizabeth Purdom ▴ 210

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975

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Transcription GO celegans BSgenome Biostrings BSgenome IRanges Transcription GO celegans

updated 14.3 years ago by Sean Davis 21k • written 14.3 years ago by Paul Shannon ★ 1.1k

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753

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celegans affy convert celegans affy convert

updated 13.7 years ago by Marc Carlson ★ 7.2k • written 13.7 years ago by Julie Zhu ★ 4.3k

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1.6k

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Gviz celegans

updated 6.3 years ago by Robert Ivanek ▴ 730 • written 6.3 years ago by alex.gos90 ▴ 10

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699

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Microarray Cancer celegans drosgenome1 affy Microarray Cancer celegans drosgenome1 affy

20.6 years ago James W. MacDonald 65k

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861

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celegans celegans

17.1 years ago Gordon Smyth 50k

9 results • Page 1 of 1

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Comment: Help with running egsea() by Chris • 0

I tried egsea.ma and got this error: gsa = egsea.ma(fit2, vector_group, probe_annotation, contrasts = contrast_matrix, gs.annots = gs.…

Comment: Getting Error in hclust(d, method = method): NA/NaN/Inf in foreign function call by angelathuynh5 • 0

Thank you for your response. To clarify, the process of making a heatmap performs rowscaling so it takes the value - (mean/std). And to res…

Comment: Limma without eBayes, is it indistunguishable from Ordinary Least Square? by Gordon Smyth 50k

The formula given in the original question is correct and yours is not. Your formula isn't even constrained to be between 0 and 1. Here is …

Comment: Method to find pathways different between 2 groups by Gordon Smyth 50k

sigPathway is another method that does not account for inter-gene correlation and which gives inflated significance, as we showed in our 20…

Answer: error in limma , contrast.matrix Number of rows of contrast matrix must match nu by James W. MacDonald 65k

I doubt you have that many contrasts. I think that is probably the number of rows. What does `dim(fit)` return (and `head(fit$coef)`)?

Votes

Answer: confused with tximport counts abundance using salmon input

Answer: Getting Error in hclust(d, method = method): NA/NaN/Inf in foreign function call

Answer: error in limma , contrast.matrix Number of rows of contrast matrix must match nu

Answer: Extremely small p-values using Limma for proteomic data

Answer: How to save the DEXSeq results

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Popular Question to Gyan Prakash Mishra ▴ 10