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ChAMP
•
reset
0
votes
2
replies
82
views
ChAMP not available for bioconductor 3.19
Bioconductor
ChAMP
updated 14 hours ago by
ATpoint
★ 4.2k • written 19 hours ago by
Macsue
• 0
0
votes
7
replies
374
views
ChAMP installation issue
Cha
ChAMP
updated 5 days ago by
James W. MacDonald
66k • written 14 days ago by
e1271094
• 0
2
votes
3
replies
213
views
Problem installing ChAMP on a MacBook
ChAMP
updated 11 days ago by
shepherl
3.9k • written 11 days ago by
Galia
• 0
2
votes
4
replies
317
views
Error EPICv2 ChAMP
ChAMPdata
IlluminaHumanMethylationEPICv2anno.20a1.hg38
ChAMP
updated 5 weeks ago by
James W. MacDonald
66k • written 5 weeks ago by
Mirella Aurora
• 0
1
vote
2
replies
189
views
Error in champ.load(): The following specified files do not exist
ChAMP
5 weeks ago
Sherin
• 0
1
vote
7
replies
1.9k
views
Error using champ.import
ChAMP
EPICv2
updated 5 weeks ago by
shilpa
• 0 • written 11 months ago by
medha.suman
• 0
2
votes
6
replies
1.7k
views
How to get DMR for Infinium methylation EPIC v2
ChAMP
DMRcate
minfi
updated 7 weeks ago by
Tim Peters
▴ 180 • written 6 months ago by
rae.alshammari
▴ 10
0
votes
2
replies
1.1k
views
error when using M-values in ChAMP
ChAMP
updated 8 weeks ago by
hortense96
• 0 • written 6.3 years ago by
a.mcneill
• 0
2
votes
5
replies
2.0k
views
Problem at champ.load
ChAMPdata
ChAMP
updated 10 weeks ago by
James W. MacDonald
66k • written 13 months ago by
angel
• 0
1
vote
16
replies
3.4k
views
error in ChAMP loading file
ChAMP
updated 10 weeks ago by
hortense96
• 0 • written 18 months ago by
Giulia
• 0
1
vote
1
reply
366
views
Need Advice: Issue with ChAMP Analysis - Meth and UnMeth Matrix Pairing Error
MethylationArray
methylationArrayAnalysis
ChAMP
updated 3 months ago by
James W. MacDonald
66k • written 3 months ago by
david.cheishvili
• 0
3
votes
5
replies
2.2k
views
Why the LogFC and delta-beta value are different in ChAMP
DNAMethylation
ChAMP
updated 3 months ago by
sup0903
• 0 • written 3.5 years ago by
Hongbii
• 0
0
votes
0
replies
239
views
how to solve this error?
ChAMPdata
ChAMP
3 months ago
Meghana
• 0
0
votes
2
replies
819
views
ChAMP - obtaining beta values using EPICv2 annotation
ChAMP
EPICv2
updated 3 months ago by
shuo
• 0 • written 4 months ago by
ChunkyJones
• 0
0
votes
0
replies
185
views
champ.load() from .idat files of GDC/TCGA dataset
TCGAbiolinks
ChAMP
3 months ago
Thalita
• 0
0
votes
3
replies
713
views
ChAMP trouble reading csv file
ChAMP
written 10 months ago by
Keasiykan
• 0
0
votes
7
replies
715
views
Deleted:No significant MVPs with a BH adjusted P-value below 0.05
ChAMP
updated 5 months ago by
Basti
▴ 780 • written 5 months ago by
486342583
• 0
2
votes
1
reply
687
views
ChAMP can't be found in Bioc3.18?
ChAMP
6 months ago
ramonfallon
▴ 20
0
votes
2
replies
2.1k
views
ChAMP::champ.norm Error in champ.BMIQ(beta[, x], design.v, sampleID = colnames(beta)[x], : task 1 failed - "only defined on a data frame with all…
ChAMP
methylation
BMIQ
updated 6 months ago by
peter.brederlo
• 0 • written 5.1 years ago by
moldach
▴ 20
2
votes
7
replies
2.5k
views
Blood cell composition adjustment in methylation EPIC array: ChAMP
MethylationArray
methylationArrayAnalysis
ChAMP
updated 7 months ago by
dorota.komar
• 0 • written 3.5 years ago by
Ankit
▴ 20
0
votes
7
replies
1.9k
views
error with champ.load
ChAMP
champ
methylation
updated 9 months ago by
mike
• 0 • written 4.1 years ago by
jkong
• 0
3
votes
7
replies
5.5k
views
error with champ.load
champ
written 6.6 years ago by
o.giannakopoulou
▴ 10
0
votes
2
replies
1.2k
views
Trouble Loading Data into Champ
loaddata
ChAMPdata
champload
R
ChAMP
updated 12 months ago by
hfbarrerat
• 0 • written 3.3 years ago by
Bethan
• 0
23 results • Page
1 of 1
Recent ...
Replies
Comment: Why is longestConsecutive() depreceated in version 2.72 (BioC version 3.19)?
by
ATpoint
★ 4.2k
I don't have an answer to the "why" but maybe a simple reimplemention will do: ```r seqs <- c("ATCATCGTATCAAAGTC", "AAAACGTATCAAAGTC", "TG…
Comment: How to add Ensembl ids after Pseudobulk analysis by DESeq2
by
Guido Hooiveld
★ 4.0k
After checking `?DESeqDataSetFromMatrix` note this information: arguments provided to SummarizedExperiment including rowRanges and met…
Answer: Error in gseDO function
by
Guido Hooiveld
★ 4.0k
Yes, you are missing something. :-) For a GSEA you will need to use as input all genes that you are analyzing; these genes should be ran…
Comment: GSVA function
by
Robert Castelo
★ 3.3k
No, negative values may occur after log transformation when the `log(x)` is taken from a positive number `x with 0 < x < 1`, and therefore …
Comment: conumee with Infinium MethylationEPIC v2.0
by
sgomez
• 0
Hi Max, Could you try this? https://support.bioconductor.org/p/9136138/#9136840
Votes
A: Comparison between two different group's pathway analysis results
DiffBind Batch Effect
A: DiffBind Batch Effect
A: DiffBind Batch Effect
C: DiffBind Batch Effect
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