Bioconductor Chimera

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prettyPrint Chimera

updated 7.5 years ago by mrp • 0 • written 7.8 years ago by anders • 0

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chimera IRanges

updated 9.1 years ago by raffaele calogero ▴ 500 • written 9.5 years ago by kelly.rabionet ▴ 10

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fusion genes chimera star

updated 9.8 years ago by richa_r • 0 • written 10.1 years ago by am26 • 0

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chimera STAR

updated 9.9 years ago by rcaloger ▴ 500 • written 9.9 years ago by wresch • 0

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rnaseq mirna onechannelgui chimera News

10.0 years ago raffaele calogero ▴ 500

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chimera chimera

updated 16.4 years ago by Thomas Girke ★ 1.7k • written 16.4 years ago by Paul Shannon ★ 1.1k

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Comment: Cross-validation with multiple control subgroups in limma by Ali Barry ▴ 40

Thanks so much for taking the time here, the insights are much appreciated. I suspected I'd have to ad hoc compare results if I did repeat …

Answer: Cross-validation with multiple control subgroups in limma by Gordon Smyth 52k

limma doesn't do cross-validation or resampling. Like most classical linear modeling procedures in statistics, limma uses a statistical mod…

Comment: Issues with seqlevelsStyle when making custom txdb objects for genomes/annotatio by Robert Castelo ★ 3.4k

Hi Hervé, thank you very much for your input into how to properly build and manage TxDb objects. gDNAx has two main inputs, one or more BAM…

Comment: Biostrings: Error writing long reads (>200 kbps) with writeQualityScaledXStringS by Aidan ▴ 60

Quick update: this is fixed in a branch awaiting PR to Biostrings (https://github.com/Bioconductor/Biostrings/pull/122). Should be in `deve…

Answer: Can DESeq2's design compensate for sequencing experimental design shortcomings? by Michael Love 43k

For statistical analysis plans, I recommend working with a local statistician or someone familiar with linear models in R. I have to reserv…

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Answer: Can DESeq2's design compensate for sequencing experimental design shortcomings?

Comment: Issues with seqlevelsStyle when making custom txdb objects for genomes/annotatio

C: edgeR and lack of counts ID on CPM matrix

A: DESeq2 Following RSEM

A: importing RSEM data into DESeq2

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