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ColData
•
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0
votes
6
replies
264
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Once again a "Model matrix not full rank"
DESeq2
design
coldata
updated 10 days ago by
swbarnes2
★ 1.4k • written 11 days ago by
arfranco
▴ 130
0
votes
2
replies
565
views
Heat Map
ColData
pheatmap
DESeq2
written 10 months ago by
dania.khalid
• 0
0
votes
1
reply
1.0k
views
Rename colData column
SingleCellExperiment
colData
rename
updated 15 months ago by
Basti
▴ 780 • written 15 months ago by
achoppe
▴ 10
1
vote
0
replies
581
views
Understanding ColData in BiSeq
BiSeq
Coldata
4.0 years ago
akhaira
• 0
2
votes
2
replies
1.4k
views
How to extract factor levels of coldata from deseq object?
deseq2
levels
factor
colData
updated 5.2 years ago by
Michael Love
42k • written 5.2 years ago by
ariel
▴ 20
4
votes
8
replies
42k
views
What is colData? How do I make one?
deseq2
coldata
updated 5.5 years ago by
swbarnes2
★ 1.4k • written 5.5 years ago by
mjrarcher
▴ 10
1
vote
7
replies
3.1k
views
Data from ##SAMPLE lines in VCF?
variantannotation
coldata
updated 5.6 years ago by
Valerie Obenchain
★ 6.8k • written 5.6 years ago by
lvclark
▴ 10
0
votes
6
replies
3.5k
views
DESeq2: handling NA values in colData
deseq2
coldata
NA
updated 5.8 years ago by
Michael Love
42k • written 5.8 years ago by
t.kuilman
▴ 170
0
votes
3
replies
1.5k
views
How to create the colData for a complex experiment
multiassayexperiment
colData
updated 6.4 years ago by
Levi Waldron
★ 1.1k • written 6.4 years ago by
Lluís Revilla Sancho
▴ 730
9 results • Page
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Comment: How can I create a eigencorplot of pca created from deseq2 object with PCAtools
by
Michael Love
42k
try `traceback()` that may help the developer figure out what's going on. Or you can make a reproducible example, with `makeExampleDESeqD…
Answer: normalization across different species for DESeq2 analysis
by
Michael Love
42k
There are many posts on this topic, in addition to that one: https://www.google.com/search?q=site%3Asupport.bioconductor.org+DESeq2+acro…
Comment: How to approach time course RNAseq data? Seeing 80% DE genes in timepoint groups
by
Ashley
• 0
Hi Gordon, thank you for replying! I've updated the original post to include code.
Comment: How to use bootRanges to bootstrap small RNA loci (nullranges package)
by
Michael Love
42k
To me, 100 and 200 kb both look fine. You want to have blocks smaller than segmentation regions.
Comment: ChAMP installation issue
by
e1271094
• 0
I discovered that the dataset data("probe.features.epicv1") is unavailable. Instead, the dataset data("probe.features.epic") is accessible.…
Votes
Ensembl 112 has been released.
A: Diffbind results - non uniform width
A: Different logFC (log2foldchange) values for genes from limma-voom and other too
Answer: Error EPICv2 ChAMP
Comment: Store output of matchPWM()
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