Bioconductor ColData

Showing : ColData • reset

votes

replies

42k

views

deseq2 coldata

updated 5.5 years ago by swbarnes2 ★ 1.4k • written 5.5 years ago by mjrarcher ▴ 10

vote

replies

3.1k

views

variantannotation coldata

updated 5.6 years ago by Valerie Obenchain ★ 6.8k • written 5.6 years ago by lvclark ▴ 10

votes

replies

264

views

DESeq2 design coldata

updated 10 days ago by swbarnes2 ★ 1.4k • written 11 days ago by arfranco ▴ 130

votes

replies

3.5k

views

deseq2 coldata NA

updated 5.8 years ago by Michael Love 42k • written 5.8 years ago by t.kuilman ▴ 170

votes

replies

1.5k

views

multiassayexperiment colData

updated 6.4 years ago by Levi Waldron ★ 1.1k • written 6.4 years ago by Lluís Revilla Sancho ▴ 730

votes

replies

565

views

ColData pheatmap DESeq2

written 10 months ago by dania.khalid • 0

votes

replies

1.4k

views

deseq2 levels factor colData

updated 5.2 years ago by Michael Love 42k • written 5.2 years ago by ariel ▴ 20

votes

1.0k

views

SingleCellExperiment colData rename

updated 15 months ago by Basti ▴ 780 • written 15 months ago by achoppe ▴ 10

vote

replies

581

views

BiSeq Coldata

4.0 years ago akhaira • 0

9 results • Page 1 of 1

Recent ...

Replies

Comment: How to use bootRanges to bootstrap small RNA loci (nullranges package) by Michael Love 42k

To me, 100 and 200 kb both look fine. You want to have blocks smaller than segmentation regions.

Comment: ChAMP installation issue by e1271094 • 0

I discovered that the dataset data("probe.features.epicv1") is unavailable. Instead, the dataset data("probe.features.epic") is accessible.…

Comment: ChAMP installation issue by e1271094 • 0

I apologise for any inconvenience. I have successfully installed the ChAMP package. However, I am now encountering a new error: myLoad <- …

Comment: How to use bootRanges to bootstrap small RNA loci (nullranges package) by Poonam • 0

Yes, blockLength=200000, and seg=seg. I am concerned about the inter-feature distance of features. I generated this plot for various bloc…

Answer: Can I trust the differential expression analysis when the two groups overlap on by Michael Love 42k

Can you use `vst` instead of `rlog` and increase to 1000 or 2000 genes? I'm wondering if there's a way to characterize these 7 samples. …

Votes

A: Diffbind results - non uniform width

A: Different logFC (log2foldchange) values for genes from limma-voom and other too

Answer: Error EPICv2 ChAMP

Comment: Store output of matchPWM()

Answer: Store output of matchPWM()

Awards • All

Scholar to mat149 ▴ 70