Showing : CopywriteR • reset
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Error in if (nrow(peaks) > 0) { : argument is of length zero Calls: CopywriteR ... tryCatch -> tryCatchList -> tryCatchOne -> <Anonymous> Execution h…
CopywriteR CopyhelpeR
7 months ago fer_talavera • 0
0
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1
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702
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CopywriteR output
CopywriteR
updated 7 months ago by • 0 • written 3.1 years ago by • 0
2
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4
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1.1k
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CopywriteR job runs out of memory
copywriter cnv
updated 4.6 years ago by ▴ 20 • written 4.6 years ago by ▴ 220
0
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1
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1.1k
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CopywriteR - low coverage-regions display very low numbers
copywriter copynumber
updated 6.2 years ago by ▴ 170 • written 6.2 years ago by • 0
3
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12
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2.3k
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S4Vectors and subectHits error
s4vectors copywriter
updated 6.6 years ago by ★ 11k • written 6.6 years ago by ▴ 200
1
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2
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1.9k
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BiocParallel and CopywriteR Error
bioconductor biocparallel copywriter
updated 7.4 years ago by 25k • written 7.4 years ago by ▴ 10
0
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1
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1.3k
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Problems with CopywriteR
copywriter
updated 7.7 years ago by ▴ 170 • written 7.7 years ago by • 0
0
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1
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1.8k
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CopywriteR: CNV calling on normals samples / gaps in chromosomes
copynumber cnvtools cnv copywriteR
updated 8.3 years ago by ▴ 170 • written 8.3 years ago by • 0
0
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3
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1.6k
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CopywriteR error: "Error in .Method"
CopywriteR
8.4 years ago Tom ▴ 10
1
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3
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1.5k
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CopywriteR can't finish calculating copy number
copywriter bam
updated 8.5 years ago by ▴ 170 • written 8.5 years ago by • 0
3
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3
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4.1k
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Preparing CopywriteR output for GISTIC 2.0 analysis
copywriter
updated 8.7 years ago by ▴ 170 • written 8.7 years ago by • 0
2
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4
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2.6k
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Visualizing CopywriteR's segmentation output in IGV
copywriter dnacopy
updated 8.8 years ago by ▴ 170 • written 8.8 years ago by • 0
1
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2
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1.4k
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Copywriter output looks strange
copywriter
8.8 years ago MatthewGField ▴ 10
2
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9
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2.8k
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Calling amplifications and deletions from CopywriteR output
CopywriteR copy number
updated 8.8 years ago by ▴ 170 • written 8.8 years ago by • 0
0
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7
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2.2k
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Multithreading CopywriteR on SLURM cluster
copywriter slurm openMPI
updated 8.8 years ago by ▴ 170 • written 8.8 years ago by • 0
0
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1
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1.5k
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CopywriteR - choosing optimal bin size for targeted sequencing panel
copywriter bin size targeted sequencing
updated 8.8 years ago by ▴ 170 • written 8.8 years ago by • 0
2
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1
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1.4k
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Copyhelper: Preprocession of mappability
CopywriteR
updated 8.9 years ago by ▴ 170 • written 8.9 years ago by • 0
17 results • Page 1 of 1
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Answer: Deseq2 res Function by Michael Love 43k
> Does this mean the young and KO groups were numerators and denominators in the analysis, respectively? Read over the vignette and work…
Answer: ANOVA like approach of edgeR by Gordon Smyth 51k
You need to clarify whether interactions are present for the two factors in your study. In the two factors do not interact, then the code y…
Answer: Create Illmina bead summary data by Gordon Smyth 51k
GenomeStudio produces IDAT files that you can read using the `read.idat` function in limma. That is the recommended way to read GenomeStudi…
Comment: Help with RSEM counts: do I transpose matrix? by NB • 0
OK thank you.
Comment: Help with RSEM counts: do I transpose matrix? by James W. MacDonald 67k
You can ask here, but please read the `DESeq2` vignette first, which should answer most questions.
Votes
Comment: Is it recommended to analyze different tissues together when using edgeR
Answer: Deseq2 res Function
Answer: BiocNeighbours Utility for k-Nearest Neighbour Classification
Answer: ANOVA like approach of edgeR
Answer: ANOVA like approach of edgeR
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