Showing : DiffBind • reset
2
votes
2
replies
2.1k
views
DiffBind; Error: No sites have activity greater than filter value
DiffBind
updated 10 months ago by • 0 • written 2.5 years ago by ▴ 10
0
votes
2
replies
1.0k
views
In DiffBind, dba.blacklist changes the minOverlap parameter
DiffBind
written 2.2 years ago by ▴ 10
1
vote
2
replies
842
views
Inconsistent results in DiffBind
DiffBind
2.2 years ago Sam ▴ 10
1
vote
2
replies
946
views
DiffBind getting Fold values of near 0
DiffBind DESeq2
updated 5 months ago by ▴ 10 • written 2.2 years ago by • 0
0
votes
0
replies
1.1k
views
Calculation of ChIP-seq normalization factors with non-conventional spike-in assumptions
csaw ChIPseq DiffBind
2.3 years ago jared.andrews07 ▴ 30
0
votes
0
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1.0k
views
DiffBind dba.count() crash/can't finish problems
dba.count DiffBind ATACSeq
updated 2.4 years ago by 68k • written 2.4 years ago by • 0
2
votes
4
replies
2.0k
views
DiffBind returns different grey lists every time I run dba.blacklist even if I set seed.
DiffBind
updated 2.4 years ago by ▴ 10 • written 2.4 years ago by • 0
2
votes
2
replies
970
views
DiffBind dba.analyze function doesn't have bSubControl option anymore?
DiffBind
2.4 years ago r.murakami • 0
1
vote
1
reply
1.4k
views
DiffBind - how to prep the sample matrix when multiple bam files are used by MACS2's -t and -c param?
DiffBind chipseq
updated 2.4 years ago by 68k • written 2.4 years ago by • 0
3
votes
7
replies
1.8k
views
Genes in open chromatin region
ChIPpeakAnno DiffBind
written 2.4 years ago by ▴ 20
0
votes
3
replies
1.3k
views
diffbind analyze for wheat
DiffBind
updated 24 months ago by • 0 • written 2.4 years ago by • 0
0
votes
1
reply
1.2k
views
Samples have been merged or lost during counting. Check for duplicate bam files. DiffBind dbacount
DiffBind
2.5 years ago Mark ▴ 10
1
vote
2
replies
1.4k
views
DiffBind plot.profile y-axis unit and individual locus value on the heatmap
DiffBind
2.5 years ago Junsik • 0
0
votes
2
replies
961
views
DiffBind error
DiffBind
updated 2.5 years ago by ★ 5.3k • written 2.5 years ago by • 0
0
votes
2
replies
2.3k
views
DiffBind dropping peaks in ATAC-seq data
DiffBind ATACSeq
updated 2.6 years ago by ★ 1.6k • written 2.6 years ago by • 0
1
vote
1
reply
4.0k
views
Help with error DiffBind
DiffBind
updated 2.6 years ago by ★ 5.3k • written 2.6 years ago by ▴ 20
1
vote
1
reply
5.2k
views
Question regarding lfcShrink types in DiffBind
FoldChange DiffBind lfcShrink
updated 2.6 years ago by ★ 5.3k • written 2.6 years ago by ▴ 20
0
votes
5
replies
7.5k
views
diffbind
DiffBind chipseq
updated 2.6 years ago by ★ 5.3k • written 2.6 years ago by • 0
0
votes
3
replies
1.4k
views
DiffBind issue with edgeR$bTagwise and DESeq2$fitType
Config DiffBind Error
updated 2.6 years ago by ★ 5.3k • written 2.6 years ago by • 0
0
votes
5
replies
2.5k
views
DiffBind handling of replicates and consensus
diffbind
updated 2.4 years ago by ★ 5.3k • written 6.1 years ago by • 0
1
vote
4
replies
1.8k
views
diffbind dba.count error "files could not be accessed" on windows 11
DiffBind
2.6 years ago Theo ▴ 10
1
vote
2
replies
1.2k
views
DiffBind Using edgeR: TMM Normalisation produces identical results to Library Size normalisation
DiffBind
updated 2.6 years ago by ★ 5.3k • written 2.6 years ago by • 0
0
votes
1
reply
1.1k
views
DiffBind output issues
DiffBind
updated 2.7 years ago by ★ 5.3k • written 2.7 years ago by • 0
1
vote
2
replies
1.5k
views
Interpret plots from DiffBind
DiffBind
2.7 years ago Chris ▴ 20
2
votes
3
replies
1.5k
views
Sample sheet file for DiffBind
DiffBind
updated 2.1 years ago by • 0 • written 2.7 years ago by ▴ 20
4
votes
4
replies
1.9k
views
DESeq2 lfcShrink function used in DiffBind package
FoldChange DiffBind lfcShrink Cut&TagData
2.7 years ago bhandary.8590 ▴ 20
1
vote
0
replies
702
views
Help with error running DiffBind
DiffBind
2.7 years ago Chris ▴ 20
1
vote
7
replies
2.5k
views
Diffbind "No genome detected"
DiffBind
updated 2.2 years ago by 68k • written 2.7 years ago by • 0
8
votes
13
replies
3.7k
views
Interpret plot from DiffBind
DiffBind
updated 2.7 years ago by ★ 5.3k • written 2.8 years ago by ▴ 20
0
votes
0
replies
679
views
Title in dba.plotProfile
DiffBind
2.7 years ago agata17 • 0
0
votes
1
reply
944
views
dba.count with pre-defined regions produced only 10% results
DiffBind diffbind
updated 2.8 years ago by ★ 5.3k • written 2.8 years ago by ▴ 10
0
votes
1
reply
1.3k
views
DiffBind dba() in parallel
DiffBind
updated 2.8 years ago by ★ 5.3k • written 2.8 years ago by • 0
1
vote
4
replies
2.5k
views
DiffBind - Retrieving the differentially bound sites - HOW to calculate fold-change
ChIPSeq DiffBind
updated 2.7 years ago by ★ 5.3k • written 2.8 years ago by • 0
1
vote
0
replies
1.1k
views
Fold values in Diffbind
DiffBind
2.8 years ago bhandary.8590 ▴ 20
2
votes
3
replies
1.3k
views
Getting different differentially accessible peaks between versions
dba.report DiffBind
written 2.8 years ago by • 0
0
votes
0
replies
826
views
Help with Diffbind result
DiffBind
2.8 years ago Chris ▴ 20
3
votes
5
replies
4.4k
views
Errors with DiffBind, Error in peaks[, pCol]/max(peaks[, pCol]) : non-numeric argument to binary operator
DiffBind
updated 6 months ago by • 0 • written 2.8 years ago by ▴ 10
0
votes
7
replies
2.4k
views
DiffBind - question about showing significant difference on peaks with 0 fold change
DiffBind
2.8 years ago • updated 2.7 years ago Ti • 0
2
votes
1
reply
1.2k
views
how diffbind count the reads of each peak in each sample?
diffbind DiffBind
updated 2.8 years ago by ★ 5.3k • written 2.8 years ago by • 0
4
votes
6
replies
1.8k
views
Positive and negative value fold value in ATAC seq using DiffBind
DiffBind ATACSeq
2.9 years ago • updated 2.8 years ago Chris ▴ 20
0
votes
1
reply
1.0k
views
Plotting read densities from DiffBind results
Read density DiffBind
updated 2.9 years ago by ★ 5.3k • written 2.9 years ago by ▴ 20
0
votes
2
replies
1.3k
views
Question regarding multiple comparisons in DiffBind
DiffBind
2.9 years ago epipally • 0
8
votes
13
replies
5.8k
views
Help with Error in DiffBind
DiffBind ATACSeq
2.9 years ago Chris ▴ 20
0
votes
2
replies
1.6k
views
Multiple issues reading in peak sets with Diffbind
DiffBind
updated 2.9 years ago by ★ 5.3k • written 2.9 years ago by • 0
0
votes
2
replies
2.3k
views
DiffBind with ChIPseq from histone analysis: EdgeR or Deseq2?
DESeq2 ChIPSeq DiffBind edgeR HistoneModification
2.9 years ago Giulia • 0
0
votes
0
replies
877
views
DiffBind with ChIPseq from histone analysis: EdgeR or Deseq2?
DESeq2 ChIPSeq DiffBind edgeR HistoneModification
2.9 years ago Giulia • 0
1
vote
3
replies
1.2k
views
Using DiffBind Normalization and Contrasting on Fold Change Values
DiffBind
updated 2.9 years ago by ★ 5.3k • written 2.9 years ago by • 0
1
vote
2
replies
1.1k
views
DiffBind spike-in lib.sizes confusion
SpikeIn DiffBind
3.0 years ago Weisheng • 0
0
votes
13
replies
3.1k
views
Does DiffBind make consensus peaks sets for samples from a given condition (e.g. case control)?
dba.analyze DiffBind @rory-stark-5741
3.0 years ago • updated 2.9 years ago tahir.msajid • 0
0
votes
1
reply
734
views
DiffBind---peak region reads or all reads？
DiffBind
updated 3.0 years ago by ★ 5.3k • written 3.0 years ago by • 0
679 results • Page 2 of 14
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Comment: Question on processing compound protein groups in limpa by JKim • 0
Many thanks. I appreciate your advice.
Answer: Question on processing compound protein groups in limpa by Gordon Smyth 53k
Different people have different ways of dealing with compound protein groups. You could just leave them in the analysis, in which case limp…
Answer: Correct usage of limpa for protein input by Gordon Smyth 53k
limpa can work on protein-level quantifications, but they must be intensity-based and must be on the log scale. From what I read (<https://…
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Troubleshooting monocle2 errors in R 4.5.1 often points to package incompatibilities, particularly with newer versions of igraph. For resea…
Comment: Deadline Extended: EuroBioC2026 Call for Abstracts by a2a2hset32aa • 0
Attending EuroBioC2026 is an excellent way for researchers to explore the intersection of technology and biology. For those seeking high qu…
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Answer: Question on processing compound protein groups in limpa
Answer: Correct usage of limpa for protein input
Answer: Correct usage of limpa for protein input
Answer: Correct usage of limpa for protein input
A: Interpretaion of dendrogram height in WGCNA?
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