Bioconductor EPICV2

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1.3k

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EpicV2 ChAMPdata

updated 6 weeks ago by icecreamlover • 0 • written 10 weeks ago by nurkenber • 0

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3.0k

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ChAMP EPICv2

updated 9 weeks ago by Ricky • 0 • written 17 months ago by medha.suman • 0

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176

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EpicV2 DMRcate

10 weeks ago kitzhu • 0

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1.0k

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sesame EPICv2manifest epicv2

5 months ago luca.s ▴ 50

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629

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sesameData EPICv2 EPICv1

updated 9 weeks ago by zhouwanding ▴ 20 • written 6 months ago by archibold.mposhi • 0

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787

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limma DMRcate MethylationArray EPICV2

updated 6 months ago by Gordon Smyth 52k • written 7 months ago by Kim • 0

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1.5k

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DNAMethylation GO MethylationArray missMethyl EPICv2

9 months ago • updated 3 months ago s.malik • 0

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1.4k

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DNAMethylation EPICv2 IlluminaHumanMethylationEPICmanifest

updated 10 months ago by James W. MacDonald 67k • written 10 months ago by rae.alshammari ▴ 10

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2.2k

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ChAMP EPICv2

updated 6 weeks ago by icecreamlover • 0 • written 11 months ago by ChunkyJones • 0

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1.5k

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sesame IlluminaHumanMethylationEPICv2anno.20a1.hg38 methylationEPICv2.0 EpicV2

updated 9 months ago by aldea85 • 0 • written 13 months ago by Courtney • 0

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2.6k

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minfiDataEPIC EpicV2

updated 15 months ago by Zuguang Gu ▴ 290 • written 16 months ago by Izabela.ams • 0

11 results • Page 1 of 1

Recent ...

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Answer: Cross-validation with multiple control subgroups in limma by Gordon Smyth 52k

limma doesn't do cross-validation or resampling. Like most classical linear modeling procedures in statistics, limma uses a statistical mod…

Comment: Issues with seqlevelsStyle when making custom txdb objects for genomes/annotatio by Robert Castelo ★ 3.4k

Hi Hervé, thank you very much for your input into how to properly build and manage TxDb objects. gDNAx has two main inputs, one or more BAM…

Comment: Biostrings: Error writing long reads (>200 kbps) with writeQualityScaledXStringS by Aidan ▴ 60

Quick update: this is fixed in a branch awaiting PR to Biostrings (https://github.com/Bioconductor/Biostrings/pull/122). Should be in `deve…

Answer: Can DESeq2's design compensate for sequencing experimental design shortcomings? by Michael Love 43k

For statistical analysis plans, I recommend working with a local statistician or someone familiar with linear models in R. I have to reserv…

Comment: how should I apply "cpg.annotate" to TCGA methylation data in hg38 for HM450K? by xiaofeiwang198266 • 0

Thanks for your reply!

Votes

C: edgeR and lack of counts ID on CPM matrix

A: DESeq2 Following RSEM

A: importing RSEM data into DESeq2

A: Expected counts from RSEM in DESeq2

A: Using RSEM reads for DESeq2

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