Bioconductor EPICv2

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ChAMP EPICv2

updated 21 days ago by shilpa • 0 • written 10 months ago by medha.suman • 0

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1.6k

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minfiDataEPIC EpicV2

updated 7 months ago by Zuguang Gu ▴ 260 • written 8 months ago by Izabela.ams • 0

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790

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sesame IlluminaHumanMethylationEPICv2anno.20a1.hg38 methylationEPICv2.0 EpicV2

updated 6 weeks ago by aldea85 • 0 • written 5 months ago by Courtney • 0

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687

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ChAMP EPICv2

updated 3 months ago by shuo • 0 • written 3 months ago by ChunkyJones • 0

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448

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DNAMethylation EPICv2 IlluminaHumanMethylationEPICmanifest

updated 11 weeks ago by James W. MacDonald 65k • written 11 weeks ago by rae.alshammari ▴ 10

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347

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limma DMRcate MethylationArray EPICV2

updated 5 days ago by Gordon Smyth 50k • written 5 days ago by Kim • 0

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267

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DNAMethylation GO MethylationArray missMethyl EPICv2

updated 9 weeks ago by belinda.phipson ▴ 40 • written 9 weeks ago by s.malik • 0

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Answer: normalization using Deseq2 by ATpoint ★ 4.1k

counts(dds, normalized=TRUE)

Comment: How to use bootRanges to bootstrap small RNA loci (nullranges package) by Poonam • 0

Hi Michael, I have tried what you suggested. I started with methylation loci. I created segment1 and segment2 but how to combine them bec…

Comment: EGSEA usage with microarray data (with vooma)? by Chris • 0

Hi Pekka, I also try EGSEA with microarray data. However, I got this error. Would you please have a suggestion? gsa = egsea.ma(numeric…

Comment: How to use bootRanges to bootstrap small RNA loci (nullranges package) by Michael Love 42k

> Any suggestions for methylation data segmentation? I think the same segmentation can be used.

Comment: deseq2 results by swbarnes2 ★ 1.3k

Cross-posted https://www.biostars.org/p/9594331/#9594458

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A: Volcanoplot with limma - RAW P-values or Adj.P-Values

Answer: Mac ARM64 build report for BioC 3.19 from 'kjohnson3' reporting ERROR which it

Comment: Mac ARM64 build report for BioC 3.19 from 'kjohnson3' reporting ERROR which it

Answer: minfi latest update for EPIC V2 chip

A: Error in DESeqDataSet : some values in assay are not integers

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