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News: RNA-seq analysis with Bioconductor Carpentries workshop, Boston, Jul 31-Aug 1
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News: Include your Bioconductor tutorial in Smörgåsbord 2023, May 22-26!
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18 months ago Maria Doyle ▴ 90
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News: Bioconductor joins GTN Smörgåsbord online training event, May 22-26, 2023!
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18 months ago Maria Doyle ▴ 90
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News: Translation Hackathon (community event) announcement
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News: BioCAsia Virtual Meeting, 15-18 October 2020
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News: Bioc2020 - Deadline for workshops/talk/poster proposals TODAY!
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4.7 years ago shepherl 4.1k
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News: Bioc2020 - Deadline for workshops/talk/poster TOMORROW
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4.7 years ago shepherl 4.1k
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News: Bioc2020 - Deadline for workshops/talk/poster proposals in ONE week
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4.7 years ago shepherl 4.1k
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News: Bioc2020 - Deadline for workshops/talk/poster proposals in two weeks!
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4.7 years ago shepherl 4.1k
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News: Bioc2020 - Registration - Call for abstracts for workshops/talks/poster - travel and caregiver scholarships
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4.7 years ago shepherl 4.1k
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News: Bioc2020 - Registration Open - Call for abstracts workshops/talks/posters Open
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4.8 years ago shepherl 4.1k
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2018 Toronto Bioconductor Conference registration details?
conference event
updated 6.9 years ago by 25k • written 6.9 years ago by • 0
12 results • Page 1 of 1
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Comment: Question about using LRT test for time course experiments with DESeq2 by Denise • 0
Not really, we are testing some toxic compounds to identify genes that are activated in response to the toxic exposure. Genes that change o…
Comment: Combining RNAseq and microarray data using edgeR/limma-voom by Adam Marstrand • 0
Hi again, Thank you for the response! Can you expound on why it is not a good idea? I realize that the expression levels/differential expr…
Answer: Combining RNAseq and microarray data using edgeR/limma-voom by James W. MacDonald 67k
No, that's not a good idea at all. You should be doing a meta-analysis with these data rather than trying to combine like that. `GeneMeta` …
Answer: GOstats kegg analysis in wheat - help - none of the objects in the first column by James W. MacDonald 67k
Check the help page for `KEGGFrame`. Your columns are out of order.
Comment: Question about using LRT test for time course experiments with DESeq2 by James W. MacDonald 67k
You are testing the interaction, so you are asking for those genes that change at any time *differently, depending on the treatment*. If co…
Votes
Answer: DecideTest vs topTAGs in edgeR
Comment: DESeq Input from Salmon + tximport/tximeta
Comment: DESeq Input from Salmon + tximport/tximeta
Comment: DESeq Input from Salmon + tximport/tximeta
Answer: DESeq Input from Salmon + tximport/tximeta
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Popular Question to Gordon Smyth 51k
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Popular Question to James W. MacDonald 67k
Popular Question to abadgerw • 0
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