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RNA-seq analysis with Bioconductor Carpentries workshop, Boston, Jul 31-Aug 1
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11 months ago
Maria Doyle
▴ 70
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485
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News:
Include your Bioconductor tutorial in Smörgåsbord 2023, May 22-26!
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12 months ago
Maria Doyle
▴ 70
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Bioconductor joins GTN Smörgåsbord online training event, May 22-26, 2023!
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12 months ago
Maria Doyle
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Translation Hackathon (community event) announcement
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22 months ago
kozo.nishida
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BioCAsia Virtual Meeting, 15-18 October 2020
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written 3.6 years ago by
Matthew Ritchie
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Bioc2020 - Deadline for workshops/talk/poster proposals TODAY!
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4.2 years ago
shepherl
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Bioc2020 - Deadline for workshops/talk/poster TOMORROW
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bioconductor
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4.2 years ago
shepherl
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Bioc2020 - Deadline for workshops/talk/poster proposals in ONE week
bioconductor
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4.2 years ago
shepherl
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Bioc2020 - Deadline for workshops/talk/poster proposals in two weeks!
bioconductor
bioc2020
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shepherl
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Bioc2020 - Registration - Call for abstracts for workshops/talks/poster - travel and caregiver scholarships
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4.2 years ago
shepherl
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4.3 years ago
shepherl
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2018 Toronto Bioconductor Conference registration details?
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updated 6.4 years ago by
Martin Morgan
25k • written 6.4 years ago by
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Answer: Dominance Index for Shotgun Metagenomics Data
by
Leo Lahti
▴ 40
1. Note that Simpson's dominance index (\lambda) is a different index than inverse Simpson (1/\lambda) or reciprocal Simpson (1-\lambda). T…
Comment: Math expression in shapeCustom legend in EnhancedVolcano
by
pl23
• 0
Thank you very much - that worked perfectly! Word of warning to those who try this: it screws up the other legends because of the markdown …
Answer: PCA plot suggestions
by
Michael Love
41k
For help with interpretation and design of analysis, I recommend working with a local statistician. Due to time restrictions, I can only…
Comment: DESeq2 Error in `.rowNamesDF<-`(x, value = value): Invalid 'row.names' length
by
ussarizona
▴ 10
Hi Michael, Yes, I could figure it out what does the error mean. In my matrix I had the first colum GeneID while in my condition I only h…
Answer: Deseq2. decontXcounts not integers. Useful alternative?
by
Michael Love
41k
Another option would be to put the per sample estimated contamination in the design. This is for example how RUV etc help remove spurious D…
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Answer: Dominance Index for Shotgun Metagenomics Data
Answer: Math expression in shapeCustom legend in EnhancedVolcano
Comment: DESeq2 Error in `.rowNamesDF<-`(x, value = value): Invalid 'row.names' length
Comment: Deseq2. decontXcounts not integers. Useful alternative?
Comment: Opposite sign of LFC in count plots of DEGs (DESeq2)
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