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FoldChange
•
reset
5
votes
4
replies
1.4k
views
Foldchange values Limma
limma
RNAseq
foldchange
5.2 years ago
susana.amaral.teixeira
▴ 20
4
votes
5
replies
1.4k
views
All genes display positive fold change in topTable results after limma
limma
microarray
foldchange
DEG
GEO
updated 4.3 years ago by
Gordon Smyth
50k • written 4.3 years ago by
Pietro
▴ 40
4
votes
4
replies
853
views
DESeq2 lfcShrink function used in DiffBind package
FoldChange
DiffBind
lfcShrink
Cut&TagData
11 months ago • updated 10 months ago
bhandary.8590
▴ 20
3
votes
5
replies
4.9k
views
How does edgeR calculate fold change?
DifferentialExpression
DEA
FC
FoldChange
edgeR
2.7 years ago
zhxiaokang
▴ 20
2
votes
9
replies
2.3k
views
extract fold change of a list of gene from EdgeR?
EdgeR
RNAseq
Foldchange
updated 2.9 years ago by
swbarnes2
★ 1.4k • written 2.9 years ago by
najib
• 0
1
vote
1
reply
1.4k
views
rnaseqDTU log2fold change DEXSeq
DEXSeq
DTU
salmon
rnaseqDTU
foldchange
updated 5.1 years ago by
Michael Love
42k • written 5.4 years ago by
fiona.dick91
▴ 60
1
vote
2
replies
500
views
How to perform longitudinal analysis using EdgeR
StatisticalMethod
FoldChange
edgeR
RNASeq
5 months ago
Sabiha
▴ 20
1
vote
1
reply
2.4k
views
Question regarding lfcShrink types in DiffBind
FoldChange
DiffBind
lfcShrink
updated 10 months ago by
Rory Stark
★ 5.2k • written 10 months ago by
bhandary.8590
▴ 20
0
votes
2
replies
1.2k
views
sigh of log2FC values in DESeq2
sign
FoldChange
DESeq2
reference
updated 2.4 years ago by
Michael Love
42k • written 2.4 years ago by
yampolsk
• 0
0
votes
1
reply
914
views
First time Statistical Analysis of RNA-seq
edgeR
RNA-Seq
log2
foldchange
q_value
updated 2.4 years ago by
Gordon Smyth
50k • written 2.4 years ago by
johndavidgriner74
• 0
0
votes
2
replies
1.6k
views
DESeq2 Log2 fold change does not make sense given change in TPM
DESeq2
TPM
Foldchange
updated 2.1 years ago by
Michael Love
42k • written 2.1 years ago by
dadca596
• 0
0
votes
7
replies
2.4k
views
topGO: GO term enrichment analysis of differentially expressed genes (!) including fold-change (!)
foldchange
topGO
DifferentialExpression
enrichment
updated 3.5 years ago by
Gordon Smyth
50k • written 3.5 years ago by
lessismore
▴ 20
12 results • Page
1 of 1
Recent ...
Replies
Answer: Identifying DEGs using limma - NanoString GeoMx-NGS RNA Expression Data
by
mohammedtoufiq91
▴ 10
https://support.bioconductor.org/u/5106/ thank you very much.
Comment: Ensembl plants at annotationHub?
by
Daniele
• 0
Thank you so much!
Answer: recount3 problem downloading data from source sra
by
Leonardo Collado Torres
★ 1.0k
Hi, I wasn't able to reproduce the issue on both bioc 3.19 (current release version) and 3.18 (closer to your session info). My guess is…
Answer: Running ENmix with mouse methylation manifest: readidat error - Error in readman
by
minardsmitha
▴ 10
Well it turns out there is a typo in the manifest file name. This particular issue is resolved by correcting the typo. A new error now …
Answer: Documenting resources in an `ExperimentHub` package?
by
James W. MacDonald
66k
The easiest way to do that IMO is to use emacs/ESS (or I believe there is some newfangled thing called RStudio? Not personally familiar, bu…
Votes
Answer: Identifying DEGs using limma - NanoString GeoMx-NGS RNA Expression Data
Answer: Identifying DEGs using limma - NanoString GeoMx-NGS RNA Expression Data
Comment: Ensembl plants at annotationHub?
how to control age and gender effect in expression data using DESeq2
Answer: Error retrieving ensembl gene id using biomaRt...
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