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StatisticalMethod FoldChange edgeR RNASeq

15 months ago Sabiha ▴ 20

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4.9k

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FoldChange DiffBind lfcShrink

updated 20 months ago by Rory Stark ★ 5.2k • written 20 months ago by bhandary.8590 ▴ 20

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1.4k

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FoldChange DiffBind lfcShrink Cut&TagData

21 months ago bhandary.8590 ▴ 20

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2.1k

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DESeq2 TPM Foldchange

updated 3.0 years ago by Michael Love 43k • written 3.0 years ago by dadca596 • 0

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1.2k

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edgeR RNA-Seq log2 foldchange q_value

updated 3.2 years ago by Gordon Smyth 52k • written 3.2 years ago by johndavidgriner74 • 0

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1.5k

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sign FoldChange DESeq2 reference

updated 3.2 years ago by Michael Love 43k • written 3.2 years ago by yampolsk • 0

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6.8k

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DifferentialExpression DEA FC FoldChange edgeR

3.5 years ago zhxiaokang ▴ 20

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3.0k

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EdgeR RNAseq Foldchange

updated 3.7 years ago by swbarnes2 ★ 1.4k • written 3.7 years ago by najib • 0

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3.8k

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foldchange topGO DifferentialExpression enrichment

updated 4.4 years ago by Gordon Smyth 52k • written 4.4 years ago by lessismore ▴ 20

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1.8k

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limma microarray foldchange DEG GEO

updated 5.1 years ago by Gordon Smyth 52k • written 5.1 years ago by Pietro ▴ 40

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1.7k

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limma RNAseq foldchange

6.1 years ago • updated 6.0 years ago susana.amaral.teixeira ▴ 20

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1.6k

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DEXSeq DTU salmon rnaseqDTU foldchange

updated 5.9 years ago by Michael Love 43k • written 6.2 years ago by fiona.dick91 ▴ 60

12 results • Page 1 of 1

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Comment: DiffBind custom normalization factor by Abbie • 0

Hello! Thanks so much for adding dba.normalize and all the documentation in the manual! I'm hoping I can ask a follow-up question here. I…

Answer: CpGs with genomic positions greater than the chromosome size in EPICv2? by James W. MacDonald 68k

All of the annotation packages provided by Bioconductor are simply repackaging of existing data from one or more sources. In this case, the…

Comment: Using TPM from tximport of Salmon output for singscore by Kent • 0

Thank you for the suggestions Michael. Would you say that after filtering out the low count genes, `rlog(counts, blind = T)` is doing the s…

Comment: Using TPM from tximport of Salmon output for singscore by Michael Love 43k

For clustering generally we recommend `vst()` see the workflow for example. For working with individual samples, I can see how a scaling/t…

Comment: DESeq2 model - How to test case/control time course model when taking account wi by Michael Love 43k

I'd recommend working with a local statistician or someone familiar with linear models in R. I have to reserve my time on the support site …

Votes

A: Machine learning in R book

Data preparation and Machine learning on time course RNAseq data

Answer: Use of org.Rn.eg.db with GRCr8 reference genome

A: use tximport's countsFromAbundance when using DESeq2

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