Showing : GO • reset
0
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1.8k
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Problem to download Kegg map from KEGGprofile package
GO KEGGprofile GO KEGGprofile
12.9 years ago gregory voisin ▴ 430
0
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4
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1.2k
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DEXSeq all p-values are 1
GO DEXSeq GO DEXSeq
updated 12.9 years ago by ★ 13k • written 12.9 years ago by ★ 13k
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0
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1.3k
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geneplotter - buildChromLoc for arrays with no .db
GO geneplotter GO geneplotter
13.0 years ago Lavinia Gordon ▴ 480
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1
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1.4k
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geneplotter - buildChromLoc for arrays with no .db package
GO geneplotter GO geneplotter
updated 13.0 years ago by ★ 7.2k • written 13.0 years ago by ▴ 480
0
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7
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1.9k
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Problem loading BED file with BED2RangedData
GO ChIPpeakAnno GO ChIPpeakAnno
updated 13.0 years ago by ★ 1.3k • written 13.0 years ago by ▴ 280
0
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0
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814
views
Gene Set Definition GSCA package
GO GO
13.0 years ago TriS ▴ 200
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4
replies
1.9k
views
AnnotationForge example does not work
GO Cancer ChipName probe affy GO Cancer ChipName probe affy
updated 13.0 years ago by ▴ 120 • written 13.0 years ago by ★ 13k
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0
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1.1k
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goseq: biased distribution of p-values
GO GenomicFeatures goseq GO GenomicFeatures goseq
13.0 years ago Joachim Jacob ▴ 10
0
votes
2
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1.1k
views
trackHubs in rtracklayer
GO rtracklayer GO rtracklayer
updated 13.0 years ago by ★ 11k • written 13.0 years ago by ★ 4.2k
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1
reply
1.3k
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GeneSetCollection with GOCollection and ontology argument
GO GO
updated 13.0 years ago by 25k • written 13.0 years ago by ▴ 150
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1
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766
views
affycoretools()
GO GO
updated 13.0 years ago by 68k • written 13.0 years ago by ★ 13k
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0
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787
views
missing probe_id in ath1121501.db
GO ath1121501 GO ath1121501
13.0 years ago Guest User ★ 13k
0
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4
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1.5k
views
GO Term Enrichment Analysis for ath1121501
Annotation GO ath1121501 probe Annotation GO ath1121501 probe
13.0 years ago Guest User ★ 13k
0
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5
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1.8k
views
GO question
Annotation GO Annotation GO
updated 13.0 years ago by ▴ 370 • written 13.0 years ago by ▴ 440
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0
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1.1k
views
illuminaRatv1.db dependency bug
GO illuminaRatv1 GO illuminaRatv1
13.0 years ago Arnar Flatberg ▴ 70
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0
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1.6k
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get synthetic exon dataset with easyRNASeq
RNASeq Alignment Annotation Normalization GO PROcess GenomicRanges DEXSeq easyRNASeq GO
13.0 years ago delhomme@embl.de ★ 1.2k
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2
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2.1k
views
Error using Homo.sapiens AnnotationDbi package with GenomicFeatures
GO AnnotationDbi GO AnnotationDbi
updated 13.0 years ago by ★ 7.2k • written 13.0 years ago by ▴ 60
0
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8
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2.9k
views
CDF for GeneChip miRNA 2 array - Is there a miRNA 3 CDF?
miRNA GO cdf affy arrayQualityMetrics miRNA GO cdf affy arrayQualityMetrics
updated 13.0 years ago by 68k • written 13.0 years ago by ▴ 290
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1
reply
1.6k
views
(minfi) Return value from dmpFinder
GO minfi GO minfi
updated 13.0 years ago by ★ 6.5k • written 13.0 years ago by ▴ 440
2
votes
1
reply
2.2k
views
medain global normalize - argument matrix
Normalization GO Normalization GO
updated 13.0 years ago by 53k • written 13.1 years ago by 68k
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1
reply
1.3k
views
GO annotation in R
Annotation GO Annotation GO
updated 13.0 years ago by ★ 7.2k • written 13.0 years ago by ★ 13k
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4
replies
3.1k
views
goseq analysis
GO graph edgeR goseq GO graph edgeR goseq
updated 13.1 years ago by ▴ 100 • written 13.1 years ago by ▴ 210
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0
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1.3k
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GAGE: script
GO gage GO gage
13.1 years ago Guest User ★ 13k
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0
replies
1.2k
views
covariate information
GO GO
13.1 years ago W. Evan Johnson ▴ 870
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1
reply
1.5k
views
How to get Gene ontology (GO) terms per probe
GO Clustering rat2302 annotate GO Clustering rat2302 annotate
updated 13.1 years ago by 68k • written 13.1 years ago by ★ 13k
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3
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1.7k
views
Annotation using the affy package
GO probe affy GO probe affy
updated 13.1 years ago by 68k • written 13.1 years ago by ★ 13k
0
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0
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1.2k
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help ith GeneAnswers / annotation package
Annotation GO oligo GeneAnswers Annotation GO oligo GeneAnswers
13.1 years ago Ingrid Mercier ▴ 60
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4
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1.5k
views
Creating annotation package with a new database schema
Annotation GO Organism Annotation GO Organism
updated 13.1 years ago by 16k • written 13.1 years ago by ▴ 30
0
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0
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835
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limma and legacy data
Microarray GO graph limma Microarray GO graph limma
13.1 years ago Simon Melov ▴ 340
0
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1
reply
1.3k
views
ANOVA for gene ontology analysis
GO GO
updated 13.1 years ago by 53k • written 13.1 years ago by ▴ 240
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3
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1.7k
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ChIPpeakAnno problem w getAllPeakSequence()
GO annotate ChIPpeakAnno GO annotate ChIPpeakAnno
updated 13.1 years ago by ★ 1.3k • written 13.1 years ago by ▴ 50
0
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1
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1.3k
views
Reading in of Exon Array CEL files for normalization/ workflow
Normalization GO cdf affy Normalization GO cdf affy
updated 13.1 years ago by 21k • written 13.1 years ago by ▴ 180
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3
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1.4k
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GOstats different goDag size just changing the
Annotation GO GOstats Annotation GO GOstats
updated 13.1 years ago by 68k • written 13.1 years ago by ▴ 370
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2
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2.6k
views
limma topTable doesn't work without replicates [was: Help with limma]
GO limma GO limma
updated 13.1 years ago by ▴ 40 • written 13.1 years ago by 53k
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0
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1.2k
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limma topTable doesn't work without replicates [was: Help with limma]
GO limma GO limma
13.1 years ago Gordon Smyth 53k
0
votes
6
replies
1.8k
views
Need help: no MTC possible
Normalization GO Normalization GO
updated 13.1 years ago by 68k • written 13.1 years ago by ▴ 290
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votes
0
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1.2k
views
get synthetic exon dataset with easyRNASeq
RNASeq Annotation Normalization GO PROcess easyRNASeq RNASeq Annotation Normalization GO
13.1 years ago delhomme@embl.de ★ 1.2k
0
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2
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2.1k
views
odd results with pvclust
GO GO
updated 13.1 years ago by ▴ 290 • written 13.1 years ago by ▴ 10
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1
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1.2k
views
Annotation databases--unable to get annotations
Annotation GO hgu95av2 probe limma Annotation GO hgu95av2 probe limma
updated 13.1 years ago by 68k • written 13.1 years ago by ★ 13k
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2
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1.4k
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Profiles
GO goProfiles GO goProfiles
updated 13.1 years ago by ★ 13k • written 13.1 years ago by ★ 13k
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4
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1.5k
views
(no subject)
RNASeq Normalization GO DESeq RNASeq Normalization GO DESeq
updated 13.1 years ago by ★ 2.0k • written 13.1 years ago by ▴ 100
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0
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1.2k
views
DESeq - skewed MAplots and other problems
RNASeq Normalization GO DESeq RNASeq Normalization GO DESeq
13.1 years ago Michal Lulu ▴ 100
0
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2
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8.4k
views
replace a value in a matrix using index
GO GO
updated 13.1 years ago by 68k • written 13.1 years ago by ▴ 20
0
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1
reply
1.8k
views
enrichment + topGO
Annotation GO topGO Annotation GO topGO
updated 13.1 years ago by ▴ 750 • written 13.1 years ago by ▴ 20
0
votes
0
replies
1.5k
views
ChipPeakAnno - slightly different results between makeVennDiagram and findPeakOverlaps
Genetics GO ChIPpeakAnno Genetics GO ChIPpeakAnno
13.1 years ago Julie Zhu ★ 4.3k
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2
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1.5k
views
which R package can be used to do all the GO analysis
Annotation GO Annotation GO
updated 13.2 years ago by ▴ 750 • written 13.2 years ago by ★ 2.0k
0
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1
reply
1.3k
views
AnnotationDBI
GO ChipName probe affy GO ChipName probe affy
updated 13.2 years ago by 68k • written 13.2 years ago by ★ 13k
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0
replies
1.1k
views
GOSEQ help
Pathways GO goseq Pathways GO goseq
13.2 years ago Emma Quinn ▴ 20
0
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1
reply
2.2k
views
Bioconductor Digest, Vol 115, Issue 22
Transcription Sequencing miRNA SmallRNA Annotation Normalization GO Cancer Organism edgeR
updated 13.2 years ago by ★ 13k • written 13.2 years ago by ▴ 10
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4
replies
1.5k
views
GO annotation
Annotation GO Annotation GO
updated 13.2 years ago by ★ 7.2k • written 13.2 years ago by ▴ 420
1,936 results • Page 11 of 39
Recent ...
Replies
Answer: Highly similar RNA-seq samples in PCA - pooling or technical duplication? by Kevin Blighe ★ 4.0k
There are alternative explanations for why these samples are so similar. The similarity could result from low biological variability in gen…
Comment: Post translational modifications and phosphoproteomics in limpa? by james.eapen • 0
Thank you!
Comment: Highly similar RNA-seq samples in PCA - pooling or technical duplication? by ATpoint ★ 5.0k
The donor effect is crystal clear, and absent in these suspicious samples. It strongly argues for a technical problem. If you really need s…
Answer: mzR-Rcpp compiler version issue by Laurent Gatto 1.6k
There are two issues here. First, a warning about mzR, that you can safely ignore. It tells you that mzR was compiled using a different …
Comment: Identifying differentially expressed genes in individual samples from a large co by jamie.gearing ▴ 60
Great. Yes, something descriptive is probably good enough, even if the p-values themselves are not so rigorous. Thanks very much Gordon!
Votes
Answer: Post translational modifications and phosphoproteomics in limpa?
Answer: Post translational modifications and phosphoproteomics in limpa?
Answer: Identifying differentially expressed genes in individual samples from a large co
Answer: Identifying differentially expressed genes in individual samples from a large co
Bioconductor Seminar Series - Dec 2: Deep-learning Gene Perturbation Effect Prediction
Awards • All
Scholar to Gordon Smyth 53k
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Popular Question to James W. MacDonald 68k
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