Showing : GO • reset
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Fwd: GO terms: Annotation for HumanMethylation450
Annotation Pathways GO probe annotate Annotation Pathways GO probe annotate
updated 12.6 years ago by ▴ 110 • written 12.6 years ago by ★ 4.2k
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GO terms: Annotation for HumanMethylation450
Annotation Pathways GO probe Annotation Pathways GO probe
updated 12.6 years ago by ▴ 110 • written 12.6 years ago by ★ 7.2k
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using offsets from EDASeq and cqn for edgeR
GO edgeR cqn EDASeq GO edgeR cqn EDASeq
12.6 years ago Kasper Daniel Hansen ★ 6.5k
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known gene => gene symbol for UCSC
GO GO
updated 12.6 years ago by 68k • written 12.6 years ago by ▴ 150
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2
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Limit on number of sequence files for forging a BSgenome
GO Cancer BSgenome BSgenome genomes GO Cancer BSgenome BSgenome genomes
12.6 years ago Hervé Pagès 16k
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6
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BED2RangedData
GO convert GO convert
updated 12.7 years ago by ▴ 40 • written 12.7 years ago by ★ 13k
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1
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2.2k
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enrichment of GO terms based on input gene list
GO hgu95av2 GO hgu95av2
updated 12.7 years ago by ▴ 570 • written 12.7 years ago by ★ 13k
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(minfi) Return value from dmpFinder
GO GO
updated 12.7 years ago by ★ 4.2k • written 12.7 years ago by ▴ 10
1
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4
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Is GO.db out of date?
Transcription GO Transcription GO
12.7 years ago chawla ▴ 190
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850
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Error in .testGOFra� me(x, organism)
GO BiocInstaller GO BiocInstaller
12.7 years ago Guest User ★ 13k
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1
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1.2k
views
Error in .testGOFrame(x, organism)
GO Organism rat2302 AnnotationDbi GO Organism rat2302 AnnotationDbi
updated 12.7 years ago by ★ 6.8k • written 12.7 years ago by ★ 13k
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10
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3.1k
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assignChromosomeRegion in 2.6.0 ChIPpeakAnno
Microarray Annotation GO Network Regression Survival Infrastructure Escherichia coli ROC
12.7 years ago Julie Zhu ★ 4.3k
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Bioconductor Digest, Vol 121, Issue 13
RNASeq Microarray Normalization GO Classification Clustering Cancer Mus musculus probe GO
12.7 years ago Matthew Thornton ▴ 390
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1
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1.4k
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Negative parameter error when using goseq
GO goseq GO goseq
updated 12.7 years ago by ▴ 320 • written 12.7 years ago by ▴ 570
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topGO expected value column showing NA
GO hgu133plus2 topGO GO hgu133plus2 topGO
12.7 years ago Kishor Tappita ▴ 340
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5
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[Rd] enabling reproducible research & R package management & install.package.version & BiocLite
GO GO
12.7 years ago Malcolm Cook ★ 1.6k
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17
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Analysis of Affymetrix Mouse Gene 2.0 ST arrays
Annotation Normalization GO PROcess oligo Annotation Normalization GO PROcess oligo
updated 12.7 years ago by 68k • written 12.7 years ago by ▴ 100
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3.2k
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multi-mapped reads: Cufflinks + baySeq? edgeR?
GO baySeq GO baySeq
12.7 years ago Guest User ★ 13k
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1
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1.2k
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ties & strandedness in distanceToNearest GRanges
GO GO
updated 12.7 years ago by ★ 6.8k • written 12.7 years ago by ▴ 60
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AgiMicroRna for new Agilent Chip format
Microarray GO limma PROcess microRNA AgiMicroRna Microarray GO limma PROcess microRNA
12.7 years ago Gordon Smyth 53k
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AgiMicroRna for new Agilent Chip format - columns gTotalGeneSignal and gTotalProbeSignal missing
GO AgiMicroRna GO AgiMicroRna
updated 12.7 years ago by ★ 1.1k • written 12.7 years ago by ★ 13k
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GO to Enzyme Commission number conversion!
GO convert GO convert
12.7 years ago Guest User ★ 13k
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1.2k
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Biostrings
GO Cancer Biostrings cycle GO Cancer Biostrings cycle
12.8 years ago Hervé Pagès 16k
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6
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1.5k
views
Extract microarray data for genes identified by GO analysis
Microarray GO Category Microarray GO Category
updated 12.8 years ago by 68k • written 12.8 years ago by ★ 13k
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12
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8.2k
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Have troubles with finding Annotations for Bovine and Rhesus\' platforms
Microarray GO oligo AnnotationForge Microarray GO oligo AnnotationForge
12.8 years ago James W. MacDonald 68k
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using offsets from EDASeq and cqn
GO edgeR cqn EDASeq GO edgeR cqn EDASeq
12.8 years ago love ▴ 150
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0
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1.1k
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easyRNASeq read counts varying when recounting same sample!
Annotation GO biomaRt easyRNASeq Annotation GO biomaRt easyRNASeq
12.8 years ago delhomme@embl.de ★ 1.2k
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A properly reproducible example of bizarre VariantAnnotation behavior
GO GO
12.8 years ago Tim Triche ★ 4.2k
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3
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curious behavior from VariantAnnotation 1.5.36
GO BSgenome BSgenome GO BSgenome BSgenome
12.8 years ago Tim Triche ★ 4.2k
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DiffBind - Scores for peakset are all the same
GO BSgenome BSgenome GO BSgenome BSgenome
updated 12.8 years ago by ★ 5.2k • written 12.8 years ago by ▴ 510
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0
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Question concerning Diffbind
Normalization GO edgeR DiffBind Normalization GO edgeR DiffBind
12.8 years ago Rory Stark ★ 5.2k
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1
reply
966
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Creating annotation database for GOstat
Annotation GO Annotation GO
updated 12.8 years ago by 68k • written 12.8 years ago by ★ 6.0k
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0
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1.6k
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how to supply a vector/list of results to GenTable in topGO?
GO PROcess topGO GO PROcess topGO
12.8 years ago Adrian Alexa ▴ 400
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rhdf5 and factors
GO GLAD GO GLAD
12.8 years ago Stephen Eglen ▴ 10
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0
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999
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Confusion over inconsistencies with showMethods('Rle') when loaded via GenomicRanges
GO IRanges GO IRanges
12.8 years ago Stephanie M. Gogarten ▴ 890
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2
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GSEABase error parsing msigdb_v3.1.xml
GO Infrastructure hgu95av2 Biobase annotate graph Category AnnotationDbi BiocGenerics GO
updated 12.8 years ago by 25k • written 12.8 years ago by ▴ 80
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DEXSeq and parallel, orphan processes.
GO DEXSeq GO DEXSeq
updated 12.8 years ago by ★ 1.9k • written 12.8 years ago by ▴ 30
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Agilent Chip G4858A-039494: columns gTotalGeneSignal, gTotalProbeSignal missing for AgiMicroRna
GO AgiMicroRna GO AgiMicroRna
12.8 years ago Guest User ★ 13k
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607
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AgiMicroRna problem
GO GO
12.8 years ago Guest User ★ 13k
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1
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1.5k
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question about "evidence code" in data.frame from GOstats packages with unsupported model organisms (Marc Carlson)
GO Organism GOstats GO Organism GOstats
updated 12.8 years ago by ★ 7.2k • written 12.8 years ago by ▴ 100
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GO graphs made with topGO are unreadable
GO graph topGO GO graph topGO
12.8 years ago Guest User ★ 13k
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1.7k
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Difficulties in using the mgsa package for Gene Set Analysis
GO rat2302 Category mgsa GO rat2302 Category mgsa
updated 12.8 years ago by ▴ 60 • written 12.8 years ago by ★ 13k
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7
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3.5k
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paper - download - pubmed
GO GO
updated 12.9 years ago by 68k • written 12.9 years ago by ▴ 300
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3
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Gene Ontology: Shortest path from root to node
GO GO
updated 12.9 years ago by ★ 7.2k • written 12.9 years ago by ★ 13k
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2
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biomaRt does not load archived Ensembl Genes database anymore.
GO biomaRt Vega GO biomaRt Vega
updated 12.9 years ago by ▴ 540 • written 12.9 years ago by ▴ 20
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Computer for the analysis of high-throughput genomic data
Sequencing Microarray GO Network Cancer Sequencing Microarray GO Network Cancer
12.9 years ago Steve Lianoglou ★ 13k
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About Rstudio via Amazon web services.
GO KEGGprofile GO KEGGprofile
12.9 years ago Dan Tenenbaum ★ 8.2k
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10
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2.6k
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Kegg Profile package problem
GO KEGGprofile GO KEGGprofile
12.9 years ago gregory voisin ▴ 430
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3
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2.4k
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Error: package/namespace load failed for ‘affycoretools
GO GUI Cancer GO GUI Cancer
updated 12.9 years ago by ★ 13k • written 12.9 years ago by ★ 2.0k
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4
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error preProcessGeneST ArrayTools (R 2.15.2, BioC 2.11)
Annotation GO ArrayTools Annotation GO ArrayTools
updated 12.9 years ago by 68k • written 12.9 years ago by ▴ 110
1,936 results • Page 10 of 39
Recent ...
Replies
Answer: mzR-Rcpp compiler version issue by Laurent Gatto 1.6k
There are two issues here. First, a warning about mzR, that you can safely ignore. It tells you that mzR was compiled using a different …
Comment: Identifying differentially expressed genes in individual samples from a large co by jamie.gearing ▴ 60
Great. Yes, something descriptive is probably good enough, even if the p-values themselves are not so rigorous. Thanks very much Gordon!
Comment: Co-occurrence Network Analysis between Algae and Bacteria by Stefano Mangiola ▴ 40
Just a placeholder, that we are extending `sccomp` to co-occurrence analyses. Yours could be a good use-case to test first. We will be in t…
Answer: DESeq2 design for haplotype MPRA by aimesd808 • 0
I appreciate you telling me about this. Now it's crystal plain to me. Publish this: https://support.bioconductor.org/p/9162649/
Answer: Extract snp information from genomic regions with biomaRt -> "oaries_snp" by Kevin Blighe ★ 4.0k
My sincere apologies that my colleagues had ignored your question. The error occurs because the "chromosomal_region" filter is not valid…
Votes
Answer: Identifying differentially expressed genes in individual samples from a large co
Answer: Identifying differentially expressed genes in individual samples from a large co
Bioconductor Seminar Series - Dec 2: Deep-learning Gene Perturbation Effect Prediction
Comment: What R/Bioconductor tools would you recommend for the analysis of sncRNA, specif
Comment: Error installing Seqinfo
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