Bioconductor GOexpress

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goexpress gopro

8.0 years ago Bogdan ▴ 670

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GOexpress

updated 2.4 years ago by kevin.rue ▴ 350 • written 2.4 years ago by grolo • 0

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GOexpress deseq2 expressionset

9.4 years ago martin.hoelzer ▴ 20

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goexpress

updated 9.0 years ago by kevin.rue ▴ 350 • written 9.0 years ago by martin.hoelzer ▴ 20

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software error goexpress

updated 9.4 years ago by kevin.rue ▴ 350 • written 9.4 years ago by kcamnairb ▴ 10

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RNA-seq transcriptomics gene ontology gene expression GOexpress

updated 5.1 years ago by kevin.rue ▴ 350 • written 5.1 years ago by atorson • 0

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gene ontology goexpress

updated 8.2 years ago by kevin.rue ▴ 350 • written 8.2 years ago by mforde84 ▴ 20

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GOexpress subset_scores <0 rows>

7.2 years ago sina.zboron • 0

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topgo biomart gene ontology goexpress pathway analysis

updated 8.8 years ago by kevin.rue ▴ 350 • written 8.8 years ago by Darya Vanichkina ▴ 130

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GOexpress heatmap gene ontology plot

updated 5.4 years ago by kevin.rue ▴ 350 • written 5.4 years ago by Antonio Campos • 0

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goexpress ExpressionSet GO_analyse

5.5 years ago rezashiralmohammad • 0

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GOexpress GO.db GOSemSim

2.3 years ago Chruut • 0

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goexpress

updated 9.4 years ago by kevin.rue ▴ 350 • written 9.4 years ago by willj ▴ 30

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598

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GOexpress

3.1 years ago jms2520 ▴ 10

14 results • Page 1 of 1

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Comment: Using TPM from tximport of Salmon output for singscore by Kent • 0

Thank you for the suggestions Michael. Would you say that after filtering out the low count genes, `rlog(counts, blind = T)` is doing the s…

Comment: Using TPM from tximport of Salmon output for singscore by Michael Love 43k

For clustering generally we recommend `vst()` see the workflow for example. For working with individual samples, I can see how a scaling/t…

Comment: DESeq2 model - How to test case/control time course model when taking account wi by Michael Love 43k

I'd recommend working with a local statistician or someone familiar with linear models in R. I have to reserve my time on the support site …

Comment: deseq2 lfc shrinkage with few DEGs by Michael Love 43k

Agree with your edit.

Comment: DESeq2 testing ratio of ratios (RIP-Seq, CLIP-Seq, ribosomal profiling) by Michael Love 43k

See above about my recommendation to collaborate with someone familiar with linear models represented in R. I have to limit my time on the …

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Comment: Using TPM from tximport of Salmon output for singscore

Answer: Using TPM from tximport of Salmon output for singscore

Comment: deseq2 lfc shrinkage with few DEGs

Answer: DESEQ2 looking at main effects while controlling for a continuous variable

Use of clusterProfiler : Error in testForValidKeytype(x, keytype)

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