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GOexpress
•
reset
9
votes
8
replies
3.9k
views
heatmap of genes based on enriched GO categories
goexpress
gopro
7.2 years ago
Bogdan
▴ 670
6
votes
7
replies
3.8k
views
GOexpress: use DESeq2 data object as input
GOexpress
deseq2
expressionset
8.6 years ago
martin.hoelzer
▴ 20
0
votes
3
replies
3.7k
views
Gene ontology and pathway analysis in R - replicate ToppGene features; best strategy for getting annotations?
topgo
biomart
gene ontology
goexpress
pathway analysis
updated 8.0 years ago by
kevin.rue
▴ 350 • written 8.0 years ago by
Darya Vanichkina
▴ 120
2
votes
6
replies
2.6k
views
GOexpress: GO_analyse function throws Error: Space required after the Public Identifier
goexpress
updated 8.2 years ago by
kevin.rue
▴ 350 • written 8.2 years ago by
martin.hoelzer
▴ 20
3
votes
6
replies
1.8k
views
GOexpress error at pValue_GO step
software error
goexpress
updated 8.6 years ago by
kevin.rue
▴ 350 • written 8.6 years ago by
kcamnairb
▴ 10
5
votes
4
replies
1.6k
views
Contrasts in GOexpress analysis?
gene ontology
goexpress
updated 7.3 years ago by
kevin.rue
▴ 350 • written 7.3 years ago by
mforde84
▴ 20
0
votes
2
replies
1.6k
views
Can't install GO.db
GOexpress
GO.db
GOSemSim
18 months ago
Chruut
• 0
3
votes
2
replies
1.3k
views
Is it common to get all 0 values when running the randomForest step in GOexpress?
goexpress
updated 8.6 years ago by
kevin.rue
▴ 350 • written 8.6 years ago by
willj
▴ 30
2
votes
4
replies
1.3k
views
GOexpress - Trouble with subset_scores result (<0 rows>)
GOexpress
subset_scores
<0 rows>
6.3 years ago
sina.zboron
• 0
1
vote
2
replies
1.2k
views
Obtain the first gene expression heatmaps from GOexpress package gene ontology enrichment analysis results
GOexpress
heatmap
gene ontology
plot
updated 4.6 years ago by
kevin.rue
▴ 350 • written 4.6 years ago by
Antonio Campos
• 0
2
votes
8
replies
1.1k
views
Errors when plotting data using heatmap_GO (GOexpress)
GOexpress
updated 19 months ago by
kevin.rue
▴ 350 • written 19 months ago by
grolo
• 0
0
votes
4
replies
1.1k
views
GOexpress - Error when plotting expression data
RNA-seq
transcriptomics
gene ontology
gene expression
GOexpress
updated 4.3 years ago by
kevin.rue
▴ 350 • written 4.3 years ago by
atorson
• 0
0
votes
2
replies
1.0k
views
'GO_analyse' function error
goexpress
ExpressionSet
GO_analyse
4.7 years ago
rezashiralmohammad
• 0
0
votes
0
replies
456
views
GOexpress pvalue and gene sets
GOexpress
2.3 years ago
jms2520
▴ 10
14 results • Page
1 of 1
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Replies
Comment: Ensembl plants at annotationHub?
by
Johannes Rainer
★ 2.0k
You can get the `EnsDb` EnsDb.Taestivum.v112.sqlite (for Ensembl 112/ ensemblgenomes 59) [here](https://www.dropbox.com/sh/msic0luivbldmb7/…
Comment: Errors in chromosome annotation-biomaRt
by
blackwidowzzz
• 0
I recommend using a different dataset specific to your rat genome assembly version 8. You can search for available datasets within Ensembl …
Answer: Errors in chromosome annotation-biomaRt
by
James W. MacDonald
66k
If you are just using HGNC symbols for the lookup, and you are trying to get NCBI IDs, then I wouldn't use `biomaRt` because it's based on …
Comment: Help with ENmix readidat
by
James W. MacDonald
66k
Please don't add to posts from two years ago. Instead make a new post. Also, please read the help page for `readidat`. The only reason to …
Comment: LRT, more than two conditions and pairwise comparisons
by
James W. MacDonald
66k
In that case, probably easiest to subset to the groups being compared.
Votes
Answer: Error retrieving ensembl gene id using biomaRt...
Comment: LRT, more than two conditions and pairwise comparisons
Answer: Control group between 2 batches have different expression in RNAseq data
Answer: How to remove batch effect to combine RNAseq data from 2 different experiments?
Comment: DESeq2- Mysterious interaction suppresses DEGs
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