Bioconductor GSA

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1.0k

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GSEA GSA vst

updated 2.8 years ago by Michael Love 43k • written 2.8 years ago by nhaus ▴ 70

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2.4k

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GSEA GSA

updated 7.1 years ago by Gordon Smyth 53k • written 7.1 years ago by Bogdan ▴ 670

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2.0k

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crlmm gsa microarray illumina

written 7.5 years ago by shaun • 0

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1.1k

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GSA

7.7 years ago Seymoo • 0

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3.0k

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gsea concept gsa

updated 8.8 years ago by Pekka Kohonen ▴ 190 • written 8.8 years ago by Lluís Revilla Sancho ▴ 760

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1.8k

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GSA

updated 8.8 years ago by Martin Morgan 25k • written 8.8 years ago by epercamh • 0

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2.1k

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gsea gsa

updated 9.6 years ago by Axel Klenk ★ 1.1k • written 9.6 years ago by Bogdan ▴ 670

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2.2k

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limma GSA confounding within-pair analysis 450k

10.5 years ago Aileen Bahl ▴ 10

8 results • Page 1 of 1

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Answer: Integration: Paired-end vs healthy single-end from a different source by James W. MacDonald 68k

If by reprocess you mean generate libraries and re-sequence, then that's something you could do. Otherwise the biological and technical dif…

Comment: "Watched Tags" are being erased rather than updated by shepherl 4.2k

I can reproduce this and have opened an issue on the code base https://github.com/Bioconductor/support.bioconductor.org/issues/112

Comment: "Watched Tags" are being erased rather than updated by shepherl 4.2k

we can investigate this issue. thank you for bringing it to our attention

Comment: deseq2 filter the low counts by Michael Love 43k

> But within each comparison (contrast), if I trace some DEGs back to the original salmon merged gene counts (or even to normalised counts)…

Comment: deseq2 filter the low counts by empty_mt • 0

Thank you for you suggestion to look at the pre-filtering section in the DESeq2 vignettes - am I missing something? I have 6 treatments, …

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Bioconductor 3.22 Released!

Comment: "Watched Tags" are being erased rather than updated

Comment: deseq2 filter the low counts

Answer: DESeq2 interactions

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