Bioconductor GSEa

Showing : GSEa • reset

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376

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fgsea gsea

8 weeks ago • updated 6 weeks ago Gordon • 0

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238

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clusterProfiler annotation gseGO gsea OrgDb

updated 8 weeks ago by Guido Hooiveld ★ 4.0k • written 8 weeks ago by enee ▴ 10

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265

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msigdb gmt GSEA

written 9 weeks ago by Georg • 0

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669

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gsea DESeq2

updated 7 months ago by ATpoint ★ 4.1k • written 7 months ago by Grace.Ciabattoni • 0

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1.4k

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enrichplot GSEA clusterProfiler

updated 7 months ago by Fatemeh • 0 • written 9 months ago by Cen • 0

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647

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GSEA fgsea

10 months ago Cen • 0

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1.0k

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GSEA voom limma

updated 10 months ago by Gordon Smyth 50k • written 10 months ago by manuelsokolov • 0

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6.8k

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GSEA GeneSetEnrichment DifferentialExpression

updated 3 months ago by ATpoint ★ 4.1k • written 2.2 years ago by nhaus ▴ 30

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1.7k

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EGSEA gene set testing vooma limma voom gsea

updated 12 days ago by Chris ▴ 10 • written 7.4 years ago by Pekka Kohonen ▴ 190

9 results • Page 1 of 1

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Answer: Documenting resources in an `ExperimentHub` package? by James W. MacDonald 66k

The easiest way to do that IMO is to use emacs/ESS (or I believe there is some newfangled thing called RStudio? Not personally familiar, bu…

Comment: ChAMP installation issue by shepherl 3.9k

We are still waiting for the goseq to respond to our requests but will take action next week if it is not resolved. ChAMP is currently una…

Comment: How to arrange multiple plots into one page in NOISeq? by baptiste.bidon • 0

Hello everyone, I am new on this site but not a noob in R (I guess). I am facing the same problem. For me, it depends on the NOIseq plot fu…

Comment: ChAMP installation issue by Tahirah • 0

Hello. Could you please share how you managed to install ChAMP in R 4.4.0? I also have R 4.4.0 and Bioconductor 3.19 version and ChAMP fail…

Answer: Identifying DEGs using limma - NanoString GeoMx-NGS RNA Expression Data by James W. MacDonald 66k

Yes, you can use `limma`.

Votes

how to control age and gender effect in expression data using DESeq2

Answer: Error retrieving ensembl gene id using biomaRt...

Comment: LRT, more than two conditions and pairwise comparisons

Answer: Control group between 2 batches have different expression in RNAseq data

Answer: How to remove batch effect to combine RNAseq data from 2 different experiments?

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Scholar to Mike Smith ★ 6.5k

Popular Question to mohammedtoufiq91 ▴ 10