Showing : Goana • reset
0
votes
3
replies
651
views
Agilent Microarray Gene Oncology analysis gone wrong
AgilentChip limma goana
updated 12 months ago by ▴ 360 • written 12 months ago by • 0
0
votes
0
replies
3.5k
views
Create a Gene Enrichment GO plot from goana output
goana RNASeq edgeR RnaSeq GO
2.8 years ago Raito92 ▴ 60
15
votes
18
replies
4.1k
views
Is goana function for Gene Ontology enrichement analysis suitable for both edgeR and DESeq2 DEGs lists?
DESeq2 edgeR goana GO
updated 2.8 years ago by 52k • written 2.8 years ago by ▴ 60
1
vote
2
replies
1.2k
views
Results Goana after edgeR pipeline
EdgeR Bioinformatics Goana
3.3 years ago Barista • 0
5
votes
7
replies
2.7k
views
Alternative tools to perform GO enrichment on DE genes
go de enrichment rnaseq goana
updated 4.7 years ago by 52k • written 4.7 years ago by ▴ 60
0
votes
3
replies
1.4k
views
UnProducible error with goana and kegga function
limma goana kegga
updated 5.3 years ago by 52k • written 5.3 years ago by ▴ 50
6
votes
10
replies
5.9k
views
goana and "No annotated genes found in universe" even with Entrez gene ids
goana edger
updated 2.9 years ago by 52k • written 5.4 years ago by ▴ 10
3
votes
4
replies
1.6k
views
Cannot retrieve DE genes from goana GO terms
limma goana edger
updated 6.4 years ago by ★ 28k • written 6.4 years ago by ▴ 370
0
votes
3
replies
2.7k
views
Using kegga and goana for Plants
edger goana kegga
updated 6.9 years ago by 52k • written 6.9 years ago by • 0
0
votes
4
replies
3.5k
views
No annotated genes found in universe error using goana and kegga
limma goana gene set enrichment
7.1 years ago emy_66 • 0
3
votes
2
replies
5.0k
views
No genes found in universe : goana error
edger goana gene ontology
7.2 years ago • updated 7.1 years ago fawazfebin ▴ 60
0
votes
2
replies
1.6k
views
prior.prob has opposite effects in goana and kegga?
limma missMethyl gometh goana kegga
updated 7.5 years ago by 52k • written 7.6 years ago by ★ 2.0k
3
votes
6
replies
2.6k
views
Strange output from goana()
edger goana
updated 7.8 years ago by 52k • written 7.8 years ago by • 0
0
votes
4
replies
2.1k
views
need help with microarray GO enrichment using goana
goana limma
updated 8.1 years ago by 52k • written 8.1 years ago by ▴ 80
4
votes
3
replies
1.5k
views
including information indicating upregulation/downregulation of genes in goana()
edger goana
updated 8.3 years ago by 67k • written 8.3 years ago by ▴ 10
15
votes
6
replies
6.7k
views
goana limma- extract list of DE genes and genes in the enriched GO terms?
limma goana
updated 9.5 years ago by 52k • written 9.5 years ago by ▴ 20
16 results • Page 1 of 1
Recent ...
Replies
Comment: ChAMP.DMR error - Error in makeGenomicRatioSetFromMatrix by O'Brien • 0
Consult the ChAMP.DMR documentation for more information on supported array types and expected data formats: https://bioconductor.org/packa…
Answer: combining raw counts and estimated counts by O'Brien • 0
It is possible to combine raw counts from TCGA and estimated counts from GEO datasets (Kalisto pseudoalignment) while mitigating batch effe…
Comment: Packages don't update, but no error or warning is thrown by neighsanlo • 0
This is useful information.
Comment: Perform gene set enrichment analysis using fgsea on two conditions that don't ha by freemanmclaughlin9969289 • 0
Tools such as Pathway Analysis with Deweighting of Overlapping Genes ([block blast][1]) or Gene Set Enrichment Analysis for Single Cell RNA…
Comment: How to get around the warning message: mzR has been built against a different Rc by Nan • 0
Hello, I was wondering if you were able to resolve this issue? I've recently encountered a similar problem and would like to ask for your a…
Votes
A: RNA-seq Normalisation - normalise all samples in experiment or only the ones use
Answer: Can DESeq2's design compensate for sequencing experimental design shortcomings?
Comment: Issues with seqlevelsStyle when making custom txdb objects for genomes/annotatio
C: edgeR and lack of counts ID on CPM matrix
A: DESeq2 Following RSEM
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