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Goana
•
reset
0
votes
0
replies
1.8k
views
Create a Gene Enrichment GO plot from goana output
goana
RNASeq
edgeR
RnaSeq
GO
14 months ago
Raito92
▴ 60
15
votes
18
replies
1.8k
views
Is goana function for Gene Ontology enrichement analysis suitable for both edgeR and DESeq2 DEGs lists?
DESeq2
edgeR
goana
GO
updated 14 months ago by
Gordon Smyth
47k • written 14 months ago by
Raito92
▴ 60
1
vote
2
replies
565
views
Results Goana after edgeR pipeline
EdgeR
Bioinformatics
Goana
21 months ago
Barista
• 0
5
votes
7
replies
1.3k
views
Alternative tools to perform GO enrichment on DE genes
go
de
enrichment
rnaseq
goana
updated 3.1 years ago by
Gordon Smyth
47k • written 3.1 years ago by
Raito92
▴ 60
0
votes
3
replies
843
views
UnProducible error with goana and kegga function
limma
goana
kegga
updated 3.7 years ago by
Gordon Smyth
47k • written 3.7 years ago by
Ahdee
▴ 50
6
votes
10
replies
3.9k
views
goana and "No annotated genes found in universe" even with Entrez gene ids
goana
edger
updated 16 months ago by
Gordon Smyth
47k • written 3.9 years ago by
matrs
▴ 10
3
votes
4
replies
1.0k
views
Cannot retrieve DE genes from goana GO terms
limma
goana
edger
updated 4.9 years ago by
Aaron Lun
★ 28k • written 4.9 years ago by
b.nota
▴ 360
0
votes
3
replies
2.1k
views
Using kegga and goana for Plants
edger
goana
kegga
updated 5.3 years ago by
Gordon Smyth
47k • written 5.3 years ago by
jfreixas
• 0
0
votes
4
replies
2.6k
views
No annotated genes found in universe error using goana and kegga
limma
goana
gene set enrichment
5.5 years ago
emy_66
• 0
3
votes
2
replies
3.9k
views
No genes found in universe : goana error
edger
goana
gene ontology
5.6 years ago
fawazfebin
▴ 60
0
votes
2
replies
1.0k
views
prior.prob has opposite effects in goana and kegga?
limma
missMethyl
gometh
goana
kegga
updated 5.9 years ago by
Gordon Smyth
47k • written 6.0 years ago by
Jenny Drnevich
★ 2.0k
3
votes
6
replies
1.9k
views
Strange output from goana()
edger
goana
updated 6.3 years ago by
Gordon Smyth
47k • written 6.3 years ago by
cronanz
• 0
0
votes
4
replies
1.5k
views
need help with microarray GO enrichment using goana
goana
limma
updated 6.5 years ago by
Gordon Smyth
47k • written 6.5 years ago by
mat149
▴ 70
4
votes
3
replies
1.0k
views
including information indicating upregulation/downregulation of genes in goana()
edger
goana
updated 6.7 years ago by
James W. MacDonald
63k • written 6.7 years ago by
jhj89
▴ 10
13
votes
6
replies
5.6k
views
goana limma- extract list of DE genes and genes in the enriched GO terms?
limma
goana
updated 7.9 years ago by
Gordon Smyth
47k • written 7.9 years ago by
carl.mann
▴ 20
15 results • Page
1 of 1
Recent ...
Replies
Comment: How to update a package at Bioconductor
by
ma79
• 0
thanks, just informed the original maintainer to send an email.
Comment: Error: biomaRt has encountered an unexpected server error.
by
Mike Smith
★ 6.0k
Unfortunately, the BioMart LDS functionality have been flaky for a while now e.g. https://support.bioconductor.org/p/9143401/ , https:/…
Comment: Use with_go along with other filters in getBM function
by
Mike Smith
★ 6.0k
Hi @rubbit0, I'm not sure I understand what you're trying to do. Do you have a long list of Ensembl Gene IDs and you're trying to select …
Comment: Adjusting for baseline when having longitudinal data, mixed model and no treat
by
Anna
▴ 20
Dear Gordon, these are my metadata. As you see some subject are missing for timepoint 1 Subject Timepoint 1 ID1 Baselin…
Comment: Question on constructing design matrix and defining contrasts for analysis
by
mohammedtoufiq91
▴ 10
Sure, noted.
Votes
Dispersion plot -Interpretation -DESeq2
Answer: Dispersion Estimates and MA plots
DESeq2: When to split multiple group samples for 'more' accurate sizefactors, dispersions etc.
WGCNA coupled with differential expression analysis: question about baseline module detection
WGCNA with paired samples
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