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Goana
•
reset
0
votes
0
replies
98
views
Create a Gene Enrichment GO plot from goana output
goana
RNASeq
edgeR
RnaSeq
GO
8 weeks ago
Raito92
▴ 60
15
votes
18
replies
502
views
Is goana function for Gene Ontology enrichement analysis suitable for both edgeR and DESeq2 DEGs lists?
DESeq2
edgeR
goana
GO
updated 8 weeks ago by
Gordon Smyth
45k • written 9 weeks ago by
Raito92
▴ 60
1
vote
2
replies
294
views
Results Goana after edgeR pipeline
EdgeR
Bioinformatics
Goana
9 months ago
Barista
• 0
4
votes
7
replies
592
views
Alternative tools to perform GO enrichment on DE genes
go
de
enrichment
rnaseq
goana
updated 2.1 years ago by
Gordon Smyth
45k • written 2.1 years ago by
Raito92
▴ 60
0
votes
3
replies
524
views
UnProducible error with goana and kegga function
limma
goana
kegga
updated 2.7 years ago by
Gordon Smyth
45k • written 2.7 years ago by
Ahdee
▴ 50
6
votes
10
replies
2.9k
views
goana and "No annotated genes found in universe" even with Entrez gene ids
goana
edger
updated 3 months ago by
Gordon Smyth
45k • written 2.8 years ago by
matrs
▴ 10
3
votes
4
replies
748
views
Cannot retrieve DE genes from goana GO terms
limma
goana
edger
updated 3.8 years ago by
Aaron Lun
★ 27k • written 3.8 years ago by
b.nota
▴ 360
0
votes
3
replies
1.5k
views
Using kegga and goana for Plants
edger
goana
kegga
updated 4.3 years ago by
Gordon Smyth
45k • written 4.3 years ago by
jfreixas
• 0
0
votes
4
replies
2.1k
views
No annotated genes found in universe error using goana and kegga
limma
goana
gene set enrichment
4.5 years ago
emy_66
• 0
0
votes
2
replies
3.3k
views
No genes found in universe : goana error
edger
goana
gene ontology
4.6 years ago
fawazfebin
▴ 30
0
votes
2
replies
812
views
prior.prob has opposite effects in goana and kegga?
limma
missMethyl
gometh
goana
kegga
updated 4.9 years ago by
Gordon Smyth
45k • written 5.0 years ago by
Jenny Drnevich
★ 2.0k
3
votes
6
replies
1.5k
views
Strange output from goana()
edger
goana
updated 5.2 years ago by
Gordon Smyth
45k • written 5.2 years ago by
cronanz
• 0
0
votes
4
replies
1.3k
views
need help with microarray GO enrichment using goana
goana
limma
updated 5.5 years ago by
Gordon Smyth
45k • written 5.5 years ago by
mat149
▴ 60
4
votes
3
replies
816
views
including information indicating upregulation/downregulation of genes in goana()
edger
goana
updated 5.7 years ago by
James W. MacDonald
59k • written 5.7 years ago by
jhj89
▴ 10
13
votes
6
replies
5.1k
views
goana limma- extract list of DE genes and genes in the enriched GO terms?
limma
goana
updated 6.9 years ago by
Gordon Smyth
45k • written 6.9 years ago by
carl.mann
▴ 20
15 results • Page
1 of 1
Recent ...
Replies
Comment: Error in h(simpleError(msg, call)) : when calling makeOrgPackagefromNCBI()
by
Lan Anh
• 0
Hello, Sorry for the late answer, I called several packages after my error and I do not know how it worked after that. Thank you for the h…
Comment: LogFC values in edgeR - w/wo intercept
by
JK Kim
• 0
Thanks, Dr. Smyth!
Comment: LogFC values in edgeR - w/wo intercept
by
JK Kim
• 0
Oops. I just corrected the URL. Thank you Dr. Smyth.
Comment: Fail to run RupRadar
by
Qingwei
• 0
Dear Sergi, Yeah, it works. ```r dm <- analyzeDuprates(bamDuprm,gtf,stranded,paired,threads, GTF.featureType="cDNA_match", GTF.attrType="ID…
Comment: LogFC values in edgeR - w/wo intercept
by
Gordon Smyth
45k
The link you've entered for "A guide to creating design matrices for gene expression experiments" doesn't work. Could you please correct th…
Votes
Comment: LogFC values in edgeR - w/wo intercept
Answer: LogFC values in edgeR - w/wo intercept
Answer: LogFC values in edgeR - w/wo intercept
Answer: broken chain import in liftOver
Answer: toGRanges help!
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