Bioconductor Goana

Showing : Goana • reset

votes

replies

3.4k

views

DESeq2 edgeR goana GO

updated 2.1 years ago by Gordon Smyth 50k • written 2.1 years ago by Raito92 ▴ 60

votes

replies

5.2k

views

goana edger

updated 2.3 years ago by Gordon Smyth 50k • written 4.8 years ago by matrs ▴ 10

votes

replies

6.2k

views

limma goana

updated 8.8 years ago by Gordon Smyth 50k • written 8.8 years ago by carl.mann ▴ 20

votes

replies

2.3k

views

edger goana

updated 7.2 years ago by Gordon Smyth 50k • written 7.2 years ago by cronanz • 0

votes

replies

1.4k

views

limma missMethyl gometh goana kegga

updated 6.8 years ago by Gordon Smyth 50k • written 7.0 years ago by Jenny Drnevich ★ 2.0k

votes

replies

4.6k

views

edger goana gene ontology

6.6 years ago • updated 6.5 years ago fawazfebin ▴ 60

votes

replies

3.1k

views

limma goana gene set enrichment

6.5 years ago emy_66 • 0

votes

replies

2.5k

views

edger goana kegga

updated 6.2 years ago by Gordon Smyth 50k • written 6.2 years ago by jfreixas • 0

votes

replies

1.2k

views

limma goana kegga

updated 4.6 years ago by Gordon Smyth 50k • written 4.6 years ago by Ahdee ▴ 50

votes

replies

2.2k

views

go de enrichment rnaseq goana

updated 4.1 years ago by Gordon Smyth 50k • written 4.1 years ago by Raito92 ▴ 60

vote

replies

959

views

EdgeR Bioinformatics Goana

2.7 years ago Barista • 0

votes

replies

419

views

AgilentChip limma goana

updated 4 months ago by SamGG ▴ 350 • written 5 months ago by samagbeyimodupe • 0

votes

replies

1.3k

views

edger goana

updated 7.7 years ago by James W. MacDonald 65k • written 7.7 years ago by jhj89 ▴ 10

votes

replies

1.9k

views

goana limma

updated 7.5 years ago by Gordon Smyth 50k • written 7.5 years ago by mat149 ▴ 70

votes

replies

1.3k

views

limma goana edger

updated 5.8 years ago by Aaron Lun ★ 28k • written 5.8 years ago by b.nota ▴ 360

votes

replies

3.0k

views

goana RNASeq edgeR RnaSeq GO

2.1 years ago Raito92 ▴ 60

16 results • Page 1 of 1

Recent ...

Replies

Comment: Cannot connect to ExperimentHub server by Jiayu • 0

Many thanks and it also resolved the same issue for me!

Comment: Help with running egsea() by Chris • 0

I tried egsea.ma and got this error: gsa = egsea.ma(numeric_matrix, vector_group, probe_annotation, contrasts = contrast_matrix, gs.an…

Comment: Getting Error in hclust(d, method = method): NA/NaN/Inf in foreign function call by angelathuynh5 • 0

Thank you for your response. To clarify, the process of making a heatmap performs rowscaling so it takes the value - (mean/std). And to res…

Comment: Method to find pathways different between 2 groups by Gordon Smyth 50k

sigPathway is another method that does not account for inter-gene correlation and which gives inflated significance, as we showed in our 20…

Answer: error in limma , contrast.matrix Number of rows of contrast matrix must match nu by James W. MacDonald 65k

I doubt you have that many contrasts. I think that is probably the number of rows. What does `dim(fit)` return (and `head(fit$coef)`)?

Votes

Answer: Cannot connect to ExperimentHub server

Answer: confused with tximport counts abundance using salmon input

Answer: Getting Error in hclust(d, method = method): NA/NaN/Inf in foreign function call

Answer: error in limma , contrast.matrix Number of rows of contrast matrix must match nu

Answer: Extremely small p-values using Limma for proteomic data

Awards • All

Popular Question to Gyan Prakash Mishra ▴ 10