Showing : HG38 • reset
2
votes
7
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2.7k
views
tximport - using hg38 with RefSeq (NM) and Gene Symbol
salmon hg38 tximport tx2gene.csv
updated 7.2 years ago by 42k • written 7.2 years ago by • 0
2
votes
5
replies
2.4k
views
getGeneLengthAndGCContent: "zero or more than one input sequence"
edaseq normalization hg38 biomart org.db
updated 6.5 years ago by ▴ 950 • written 6.5 years ago by • 0
0
votes
4
replies
2.2k
views
Rsubread function buildindex cannot handle the GRCh38.p7 reference from NCBI
rsubread ncbi GRCh38 hg38
updated 7.6 years ago by ★ 3.6k • written 7.6 years ago by • 0
2
votes
4
replies
1.0k
views
Help with Missing Gene from hg38
annotation genome hg38 TxDb.Hsapiens.UCSC.hg38.knownGene BSgenome.Hsapiens.UCSC.hg38
updated 4.3 years ago by ▴ 160 • written 4.3 years ago by • 0
6
votes
3
replies
1.1k
views
Annotating all SNVs in a genomic area, based on HG38 coordinates
Annotation variation HG38
updated 3.5 years ago by 66k • written 3.6 years ago by • 0
0
votes
2
replies
1.6k
views
problem running featurecounts using hg38 in-built annotation
featurecounts hg38
7.0 years ago raf4 ▴ 20
0
votes
1
reply
712
views
Genic annotations of whole hg38
hg38 genicannotations
updated 2.7 years ago by 66k • written 2.7 years ago by • 0
0
votes
1
reply
386
views
Is SeqSQC compatible with hg38?
SeqSQC hg38
updated 7 months ago by 66k • written 7 months ago by • 0
1
vote
1
reply
2.1k
views
package ‘BSgenome.Hsapiens.UCSC.hg38’ is not available (for R version 3.1.2)
bsgenome hg38 r version 3.1.2
updated 8.7 years ago by 66k • written 8.7 years ago by • 0
9 results • Page 1 of 1
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Comment: conumee with Infinium MethylationEPIC v2.0 by Maximus • 0
Hi Sole, If there is a combined mixture of MSet of 450K, EPIC and EPICv2, how should I create an annotation object? I tried to create anno…
Comment: Volcano plot of scRNA-seq data not "centered" by tjl • 0
Thank you both. The code is below, simplified a bit for simplicity. ATpoint, your suggestion re: the top 20% of genes by baseMean makes me …
Comment: Cannot install oligo on Fedora by James W. MacDonald 66k
Wait a minute. The `oligo` package is *supposed to* be using `zlibbioc`, but apparently it is not. I get the same thing as you do, where it…
Comment: Cannot install oligo on Fedora by James W. MacDonald 66k
There is the `zlibbioc` package that provides the headers for zlib 1.2.5, that I think you should be able to use, although that would requi…
Answer: GSVA function by Robert Castelo ★ 3.3k
Hi, We recommend to input normalized expression values in logarithmic scale to GSVA. We also recommend to use the latest release of the …
Votes
DeSeq2 results converting ENSG IDs to Gene Symbols, more than one ENSG ID per Gene symbol
DESeq2 swap ensembl gene id rownames with gene symbol column
A: DeSeq2 results converting ENSG IDs to Gene Symbols, more than one ENSG ID per Ge
DESeq2: add annotations (from data frame) to DESeqDataSet
Add new columns to DESeqResults from text file by matching rownames.
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