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HG38
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0
votes
4
replies
2.2k
views
Rsubread function buildindex cannot handle the GRCh38.p7 reference from NCBI
rsubread
ncbi
GRCh38
hg38
updated 7.5 years ago by
Wei Shi
★ 3.6k • written 7.6 years ago by
jan.soderman
• 0
2
votes
7
replies
2.7k
views
tximport - using hg38 with RefSeq (NM) and Gene Symbol
salmon
hg38
tximport
tx2gene.csv
updated 7.2 years ago by
Michael Love
42k • written 7.2 years ago by
seb.boegel
• 0
0
votes
1
reply
705
views
Genic annotations of whole hg38
hg38
genicannotations
updated 2.7 years ago by
James W. MacDonald
65k • written 2.7 years ago by
bundo
• 0
1
vote
1
reply
2.1k
views
package ‘BSgenome.Hsapiens.UCSC.hg38’ is not available (for R version 3.1.2)
bsgenome
hg38
r version 3.1.2
updated 8.7 years ago by
James W. MacDonald
65k • written 8.7 years ago by
kylvalda
• 0
2
votes
5
replies
2.4k
views
getGeneLengthAndGCContent: "zero or more than one input sequence"
edaseq
normalization
hg38
biomart
org.db
updated 6.5 years ago by
davide risso
▴ 950 • written 6.5 years ago by
mark.ebbert
• 0
2
votes
4
replies
1.0k
views
Help with Missing Gene from hg38
annotation
genome
hg38
TxDb.Hsapiens.UCSC.hg38.knownGene
BSgenome.Hsapiens.UCSC.hg38
updated 4.3 years ago by
kayla.interdonato
▴ 160 • written 4.3 years ago by
jam526
• 0
6
votes
3
replies
1.1k
views
Annotating all SNVs in a genomic area, based on HG38 coordinates
Annotation
variation
HG38
updated 3.5 years ago by
James W. MacDonald
65k • written 3.5 years ago by
Emanuele
• 0
0
votes
1
reply
380
views
Is SeqSQC compatible with hg38?
SeqSQC
hg38
updated 7 months ago by
James W. MacDonald
65k • written 7 months ago by
isml2688
• 0
0
votes
2
replies
1.6k
views
problem running featurecounts using hg38 in-built annotation
featurecounts
hg38
7.0 years ago
raf4
▴ 20
9 results • Page
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Answer: Numerical differences in DESeq2 output depending on different design matrix cons
by
Michael Love
42k
Yes there can be small numerical differences in the estimated quantities because of how the algorithms decide to stop iterating.
Answer: DESeq2- Mysterious interaction suppresses DEGs
by
Michael Love
42k
Removing samples from one group nevertheless changes the variance estimation (dispersion) for all comparisons. So you could have pushed one…
Comment: Ensembl plants at annotationHub?
by
Daniele
• 0
Hi, I'm using Ensembl Plants release 59 with the IWGSC RefSeq v1.1 gene annotation. Thanks a lot for replying so quickly!
Comment: Numerical differences in DESeq2 output depending on different design matrix cons
by
swbarnes2
★ 1.4k
If you restrict yourself to, say, genes with a baseMean > 50, are the numerical differences between the two designs significant?
Comment: DESeq2- Mysterious interaction suppresses DEGs
by
shaunpeterson
• 0
The images I tried to attach didn't attach. Here is the PCA (MDS) of all the samples, with the Cortex outlier highlighed. ![enter image de…
Votes
Answer: Error while installing BiocManager::install("org.Vdahliae.eg.db")
Comment: How can I create a eigencorplot of pca created from deseq2 object with PCAtools
Answer: Importing a GraphNEL into Cytoscape with RCy3 with error: "Error in cyrestPUT(pa
Answer: Importing a GraphNEL into Cytoscape with RCy3 with error: "Error in cyrestPUT(pa
Rsubread counting peaks ATACseq
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