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HTA2.0
•
reset
0
votes
2
replies
451
views
What is the best way to do annotation of the transcript clusters and filter in HTA 2.0
HTA2.0
microarray
affy
r
20 months ago
Marco_aurelio
• 0
2
votes
7
replies
437
views
Affycoretools package, HTA 2.0 annotation for non-coding RNA
affy
rna
hta2.0
r
updated 24 months ago by
James W. MacDonald
59k • written 24 months ago by
Marco_aurelio
• 0
1
vote
2
replies
577
views
Inconsistent results when normalizing HTA2.0 arrays at "level=core"
oligo
HTA2.0
affycoretools
RMA
fitProbeLevelModel
updated 2.9 years ago by
James W. MacDonald
59k • written 2.9 years ago by
Guido Hooiveld
★ 3.2k
4
votes
4
replies
556
views
arrayQualityMetrics in reading HTAfeatureSet read by oligo package
microarray
hta2.0
arrayqualitymetrics
updated 3.4 years ago by
Mike Smith
★ 5.5k • written 3.5 years ago by
RV
▴ 10
0
votes
5
replies
924
views
Help for Affymetrix HTA 2.0 [transcript (gene) version] annotation
hta2.0
annotation
transcripts
updated 3.7 years ago by
svlachavas
▴ 780 • written 3.7 years ago by
Biomed
• 0
2
votes
8
replies
1.1k
views
Transcript-level SCAN.UPC preprocessing for Affymetrix HTA 2.0 arrays
microarray
scan.upc
hta2.0
updated 4.4 years ago by
Stephen Piccolo
▴ 580 • written 4.4 years ago by
Lukas__
• 0
1
vote
3
replies
891
views
Use of RMA to get exon-level summaries for HTA 2.0
differential exon usage
exon array analysis
annotation
hta2.0
diffsplice
updated 4.7 years ago by
James W. MacDonald
59k • written 4.7 years ago by
relathman
▴ 20
2
votes
3
replies
1.0k
views
Filtering of lowly expressed probes in HTA 2.0 using new pd.hta.2.0 version 3.12.2
pd.hta.2.0
hta2.0
affycoretools
updated 4.7 years ago by
James W. MacDonald
59k • written 4.7 years ago by
relathman
▴ 20
2
votes
7
replies
1.6k
views
HTA 2.0 and Transcript level analysis
hta2.0
transcripts
4.7 years ago
giroudpaul
▴ 40
0
votes
0
replies
636
views
segfault when trying to convert hta20_Hs_ENSE_22.cdf to binary format
affxparser
cdf
hta2.0
4.9 years ago
relathman
▴ 20
0
votes
0
replies
834
views
Putative batch effect assessment and correction for downstream DE analysis with microarray dataset
hta2.0
limma
batch effect
affymetrix microarrays
ComBat
5.1 years ago • updated 5.0 years ago
svlachavas
▴ 780
2
votes
3
replies
1.1k
views
Problem with memory limit in Rstudio/Windows when importing Affymetrix HTA 2.0 CEL files with oligo R package
oligo
hta2.0
affymetrix microarrays
memory problem
updated 5.1 years ago by
James W. MacDonald
59k • written 5.1 years ago by
svlachavas
▴ 780
6
votes
7
replies
2.2k
views
Appropriate pre-processing pipeline for Human Transcriptome Array HTA 2.0 with oligo for DE analysis
oligo
affycoretools
hta2.0
affymetrix
updated 3 days ago by
Yang Shi
• 0 • written 5.1 years ago by
svlachavas
▴ 780
0
votes
0
replies
572
views
(strange?) memory problem when running fitPLM on a set of HTA 2.0 arrays
affyPLM
fitPLM
hta2.0
5.7 years ago
Guido Hooiveld
★ 3.2k
14 results • Page
1 of 1
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Answer: UniprotKB AC/ID to Entrez ID Conversion
by
Guido Hooiveld
★ 3.2k
The key to realize is that your input is a vector of Uniprot **ID**s (also known as 'entry names') . The central identifier in the Uniprot …
Comment: Methods for removing unexpressed probes of Affymetrix Human Genome U219 Array
by
Yang Shi
• 0
Thanks sir! The normalization of SCAN not only log2 but also center to zero transformation. But in my opinion, the latter (center to 0) is …
Comment: Methods for removing unexpressed probes of Affymetrix Human Genome U219 Array
by
Yang Shi
• 0
Thanks sir! I got it now!
Comment: Reading multiple data segments from FCS 3.0 file
by
SamGG
▴ 270
You should better start a question, but here is some clues. While this operation is refered as concatenate you can find it as coerce in flo…
Answer: how to make a group to apply the data to CAMERA
by
Gordon Smyth
45k
See the [limma User's Guide](https://www.bioconductor.org/packages/3.15/bioc/vignettes/limma/inst/doc/usersguide.pdf) for how to undertake …
Votes
Answer: Methods for removing unexpressed probes of Affymetrix Human Genome U219 Array
Answer: Methods for removing unexpressed probes of Affymetrix Human Genome U219 Array
Answer: Print EnhancedVolcano Plot as jpeg or similar in R Notebook
Comment: Print EnhancedVolcano Plot as jpeg or similar in R Notebook
A: coefficient not estimable (limma warning)
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