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HTA2.0
•
reset
0
votes
2
replies
650
views
Seeking Advice on HTA 2.0 Microarray Data Processing with Oligo Package
hta20transcriptcluster.db
org.Sc.sgd.db
HTA2.0
MicroRNAArrayData
11 months ago
Yao Lipu
• 0
0
votes
2
replies
1.7k
views
What is the best way to do annotation of the transcript clusters and filter in HTA 2.0
HTA2.0
microarray
affy
r
5.4 years ago
Marco_aurelio
• 0
2
votes
7
replies
1.9k
views
Affycoretools package, HTA 2.0 annotation for non-coding RNA
affy
rna
hta2.0
r
updated 5.8 years ago by
James W. MacDonald
68k • written 5.8 years ago by
Marco_aurelio
• 0
1
vote
2
replies
2.0k
views
Inconsistent results when normalizing HTA2.0 arrays at "level=core"
oligo
HTA2.0
affycoretools
RMA
fitProbeLevelModel
updated 6.6 years ago by
James W. MacDonald
68k • written 6.6 years ago by
Guido Hooiveld
★ 4.1k
4
votes
4
replies
1.7k
views
arrayQualityMetrics in reading HTAfeatureSet read by oligo package
microarray
hta2.0
arrayqualitymetrics
updated 7.2 years ago by
Mike Smith
★ 6.6k • written 7.2 years ago by
RV
▴ 10
0
votes
5
replies
3.1k
views
Help for Affymetrix HTA 2.0 [transcript (gene) version] annotation
hta2.0
annotation
transcripts
updated 7.4 years ago by
svlachavas
▴ 840 • written 7.4 years ago by
Biomed
• 0
2
votes
8
replies
2.8k
views
Transcript-level SCAN.UPC preprocessing for Affymetrix HTA 2.0 arrays
microarray
scan.upc
hta2.0
updated 8.1 years ago by
Stephen Piccolo
▴ 600 • written 8.2 years ago by
Lukas__
• 0
1
vote
3
replies
1.9k
views
Use of RMA to get exon-level summaries for HTA 2.0
differential exon usage
exon array analysis
annotation
hta2.0
diffsplice
updated 8.5 years ago by
James W. MacDonald
68k • written 8.5 years ago by
relathman
▴ 20
2
votes
3
replies
2.0k
views
Filtering of lowly expressed probes in HTA 2.0 using new pd.hta.2.0 version 3.12.2
pd.hta.2.0
hta2.0
affycoretools
updated 8.5 years ago by
James W. MacDonald
68k • written 8.5 years ago by
relathman
▴ 20
2
votes
7
replies
3.9k
views
HTA 2.0 and Transcript level analysis
hta2.0
transcripts
8.5 years ago
giroudpaul
▴ 40
0
votes
0
replies
1.5k
views
segfault when trying to convert hta20_Hs_ENSE_22.cdf to binary format
affxparser
cdf
hta2.0
8.7 years ago
relathman
▴ 20
0
votes
0
replies
1.7k
views
Putative batch effect assessment and correction for downstream DE analysis with microarray dataset
hta2.0
limma
batch effect
affymetrix microarrays
ComBat
8.8 years ago
svlachavas
▴ 840
2
votes
3
replies
2.1k
views
Problem with memory limit in Rstudio/Windows when importing Affymetrix HTA 2.0 CEL files with oligo R package
oligo
hta2.0
affymetrix microarrays
memory problem
updated 8.9 years ago by
James W. MacDonald
68k • written 8.9 years ago by
svlachavas
▴ 840
6
votes
7
replies
4.3k
views
Appropriate pre-processing pipeline for Human Transcriptome Array HTA 2.0 with oligo for DE analysis
oligo
affycoretools
hta2.0
affymetrix
updated 3.8 years ago by
Yang Shi
▴ 10 • written 8.9 years ago by
svlachavas
▴ 840
0
votes
0
replies
1.2k
views
(strange?) memory problem when running fitPLM on a set of HTA 2.0 arrays
affyPLM
fitPLM
hta2.0
9.4 years ago
Guido Hooiveld
★ 4.1k
15 results • Page
1 of 1
Recent ...
Replies
Comment: Question on processing compound protein groups in limpa
by
JKim
• 0
Many thanks. I appreciate your advice.
Answer: Question on processing compound protein groups in limpa
by
Gordon Smyth
53k
Different people have different ways of dealing with compound protein groups. You could just leave them in the analysis, in which case limp…
Answer: Correct usage of limpa for protein input
by
Gordon Smyth
53k
limpa can work on protein-level quantifications, but they must be intensity-based and must be on the log scale. From what I read (<https://…
Comment: A problem occurs when running the monocle2
by
a2a2hset32aa
• 0
Troubleshooting monocle2 errors in R 4.5.1 often points to package incompatibilities, particularly with newer versions of igraph. For resea…
Comment: Deadline Extended: EuroBioC2026 Call for Abstracts
by
a2a2hset32aa
• 0
Attending EuroBioC2026 is an excellent way for researchers to explore the intersection of technology and biology. For those seeking high qu…
Votes
Answer: Question on processing compound protein groups in limpa
Answer: Correct usage of limpa for protein input
Answer: Correct usage of limpa for protein input
Answer: Correct usage of limpa for protein input
A: Interpretaion of dendrogram height in WGCNA?
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chirag.parsania
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