Biostar HTA2.0

Showing : HTA2.0 • reset

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231

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HTA2.0 microarray affy r

10 months ago Marco_aurelio • 0

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250

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affy rna hta2.0 r

updated 14 months ago by James W. MacDonald 57k • written 14 months ago by Marco_aurelio • 0

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332

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oligo HTA2.0 affycoretools RMA fitProbeLevelModel

updated 2.1 years ago by James W. MacDonald 57k • written 2.1 years ago by Guido Hooiveld ★ 3.0k

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411

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microarray hta2.0 arrayqualitymetrics

updated 2.6 years ago by Mike Smith ★ 5.0k • written 2.6 years ago by RV ▴ 10

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674

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hta2.0 annotation transcripts

updated 2.9 years ago by svlachavas ▴ 780 • written 2.9 years ago by Biomed • 0

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878

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microarray scan.upc hta2.0

updated 3.6 years ago by Stephen Piccolo ▴ 570 • written 3.6 years ago by Lukas__ • 0

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762

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differential exon usage exon array analysis annotation hta2.0 diffsplice

updated 3.9 years ago by James W. MacDonald 57k • written 3.9 years ago by relathman ▴ 20

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906

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pd.hta.2.0 hta2.0 affycoretools

updated 3.9 years ago by James W. MacDonald 57k • written 3.9 years ago by relathman ▴ 20

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1.4k

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hta2.0 transcripts

3.9 years ago giroudpaul ▴ 40

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520

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affxparser cdf hta2.0

4.1 years ago relathman ▴ 20

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696

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hta2.0 limma batch effect affymetrix microarrays ComBat

4.2 years ago svlachavas ▴ 780

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974

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oligo hta2.0 affymetrix microarrays memory problem

updated 4.3 years ago by James W. MacDonald 57k • written 4.3 years ago by svlachavas ▴ 780

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1.8k

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oligo affycoretools hta2.0 affymetrix

updated 4.3 years ago by James W. MacDonald 57k • written 4.3 years ago by svlachavas ▴ 780

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461

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affyPLM fitPLM hta2.0

4.8 years ago Guido Hooiveld ★ 3.0k

14 results • Page 1 of 1

Recent ...

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Comment: DESeq2 question: why I got discrepancy results for DEGs when using different way by Ming ▴ 350

Thx for the advice about the reference levels, in which I did do as you suggested! In fact, I even tried more options just want to see why…

Answer: Time series DE gene analysis with edgeR where specific timepoints have NA levels by Gordon Smyth 43k

> is there a way to incorporate also the information of the additional samples that lack any of the aforementioned levels? NA values are n…

Comment: Time series DE gene analysis with edgeR where specific timepoints have NA levels by James W. MacDonald 57k

The `voomLmFit` function will automatically fit a linear mixed model accounting for within-subject correlations if you block on patient, so…

Comment: error in getBM (biomaRt): "error: no such table: metadata" by Mike Smith ★ 5.0k

Thanks for providing this solution. Anyone else encountering the issue can test if the cache is a problem by running `getBM()` with the ar…

Comment: Time series DE gene analysis with edgeR where specific timepoints have NA levels by svlachavas ▴ 780

Dear James, thank you very much for your comment; please excuse me for my naïve additional question, but is there an example in the edgeR …

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tximeta error in fetching genome info

Answer: error in getBM (biomaRt): "error: no such table: metadata"

C: DESeq2 design formula: single control for multiple conditions [RIP-seq]

DESeq2 testing ratio of ratios (RIP-Seq, CLIP-Seq, ribosomal profiling)

Answer: cannot install edgeR on M1 Mac

Awards • All

Scholar to James W. MacDonald 57k

Teacher to Guido Hooiveld ★ 3.0k

Scholar to Michael Love 33k