Bioconductor IlluminaHumanMethylationEPICmanifest

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DNAMethylation EPICv2 IlluminaHumanMethylationEPICmanifest

updated 10 weeks ago by James W. MacDonald 65k • written 10 weeks ago by rae.alshammari ▴ 10

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IlluminaHumanMethylationEPICmanifest ChAMP annotation

updated 11 months ago by James W. MacDonald 65k • written 11 months ago by Matilda • 0

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ENmix IlluminaHumanMethylationEPICmanifest

updated 24 months ago by shepherl 3.9k • written 24 months ago by Daphna • 0

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Illumina minfi IlluminaHumanMethylationEPICmanifest

2.0 years ago octaviompa • 0

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IlluminaHumanMethylationEPICmanifest minfi conumee

updated 3.0 years ago by volker hovestadt ▴ 40 • written 3.1 years ago by theresa.walder • 0

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IlluminaHumanMethylationEPICmanifest

updated 2.2 years ago by Di • 0 • written 3.1 years ago by poojitha.stemcell ▴ 10

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illuminaio illuminahumanmethylationepicmanifest minfi

updated 6.3 years ago by Kasper Daniel Hansen ★ 6.5k • written 6.3 years ago by Giovanni Calice ▴ 160

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illuminahumanmethylationepicanno.ilmn10b.hg19 illuminahumanmethylationepicmanifest minfi limma 850k

7.1 years ago ceciliebucher • 0

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minfi methylation illuminahumanmethylationepicmanifest illumina

8.1 years ago rasii • 0

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minfi methylation IlluminaHumanMethylationEPICmanifest IlluminaHumanMethylationEPICanno.ilmn10b.hg19

updated 8.1 years ago by Kasper Daniel Hansen ★ 6.5k • written 8.1 years ago by igor ▴ 40

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Comment: Deseq2 and Normalization of RNA sequencing data by kcarey • 0

Noise in terms of expression...to make sure that the information reported is not due to artifacts and actually expression. When I had FPKM …

Answer: NEED FOR NESSASORY HELP by Gordon Smyth 50k

Is this quesion related to your earlier question? https://support.bioconductor.org/p/9157127/ If you've already done an edgeR analysis, yo…

Answer: Gene-by-sample covariates in limma by Gordon Smyth 50k

Your first method would be valid if, instead of taking ratios, you instead used the differences between the log-transformed 13C and 12C int…

Answer: Why does GSEA on edgeR results for randomized samples give highly significant p- by Gordon Smyth 50k

You have discovered something that I have pointed out many times on this forum. fgsea does not implement the classic GSEA method published …

Comment: Once again a "Model matrix not full rank" by James W. MacDonald 65k

In that case both time and treatment are identical things, so choose one and go with it.

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Bioconductor 3.19 is Released!

A: Error in DESeqDataSet : some values in assay are not integers

Bioconductor 3.19 is Released!

Answer: DEseq2 coefficient

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