Bioconductor Install

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Bioconductor Install DESeq2

updated 4 months ago by picasa1983 • 0 • written 2.2 years ago by Victor • 0

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bioconductorpackages Install

updated 9 weeks ago by Guru • 0 • written 3.4 years ago by k200987 • 0

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Install impute

updated 12 months ago by yuzhijian • 0 • written 2.2 years ago by Aaron • 0

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Bioconductor Install affy

updated 5 months ago by ATpoint ★ 4.0k • written 17 months ago by laujihen • 0

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Install instal

updated 5 months ago by James W. MacDonald 65k • written 5 months ago by client.kashi • 0

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Bioconductor Install library biocmanager

updated 9 months ago by Vincent J. Carey, Jr. 6.7k • written 9 months ago by Ndimensional ▴ 20

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DESeq2 SummarizedExperiment SparseArray Install DelayedArray

updated 5 months ago by Michael Love 41k • written 5 months ago by eg226 • 0

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Install

updated 22 days ago by Arash • 0 • written 13 months ago by fenglingao • 0

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Bioconductor Install

updated 9 months ago by Mike Smith ★ 6.5k • written 9 months ago by Catia • 0

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Install msa

11 months ago Ido • 0

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Install

5 months ago Alexander • 0

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316

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DNABarcodes Install

12 weeks ago nk130 • 0

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bioconductor Install

7 days ago • updated 6 days ago BioinfGuru ▴ 30

13 results • Page 1 of 1

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Answer: ATACseq merge peaks by ATpoint ★ 4.0k

That depends on your analysis. Typically, for differential analysis (and convenience) you would produce a single set of peaks (e.g. by merg…

Comment: Deseq2. decontXcounts not integers. Useful alternative? by camp ▴ 10

Yes, @atpoint is correct. decontX decontaminated counts are not integers due to the way the variation inference algorithm works, but you ca…

Comment: Deseq2. decontXcounts not integers. Useful alternative? by ATpoint ★ 4.0k

I do not know this decontamination tool you use but generally: If these counts are basically "corrected" raw counts in the sense that they'…

Answer: Improving the design matrices vignette in RNAseq123 by Gordon Smyth 50k

Thanks to Shian Su, we have confirmed that the problem in the design matrices vignette html is caused by a bug in knitr 1.44 (to do with sp…

Comment: Opposite sign of LFC in count plots of DEGs (DESeq2) by winwater0928 • 0

Thank you for your comment! I'll review my code from top to bottom.

Votes

Comment: Deseq2. decontXcounts not integers. Useful alternative?

Comment: Opposite sign of LFC in count plots of DEGs (DESeq2)

biomaRt error: database disk image is malformed

Comment: biomaRt : No lock file for BiocFileCache

Answer: Cross-species analysis - how to compute the mid parent value?

Awards • All

Scholar to Michael Love 41k

Scholar to James W. MacDonald 65k

Supporter to JKim • 0