Bioconductor Isoforms

Showing : Isoforms • reset

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isoforms DESeq2

3.0 years ago arfranco ▴ 130

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RATs RNA-Seq Isoforms DTU expression

updated 5.7 years ago by fruce_ki ▴ 20 • written 5.7 years ago by UserAnonyme • 0

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isoforms diffrential expression noncoding rna TSIS isoformswitchanalyzeR

6.9 years ago rbenel ▴ 40

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1.2k

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dexseq differential isoform usage isoforms summarizeoverlaps granges

7.0 years ago A ▴ 60

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1.7k

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cummerbund heatmap isoforms transcript_id

8.0 years ago domenico.somma • 0

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3.9k

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dexseq bitseq cuffdiff Differential exon usage isoforms

9.8 years ago elle ▴ 10

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2.9k

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edgeR ruvseq rnaseq isoforms

9.9 years ago • updated 9.8 years ago sergio.espeso-gil • 0

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1.6k

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DEXSeq transcripts isoforms

updated 9.9 years ago by Alejandro Reyes ★ 1.9k • written 9.9 years ago by peter_venhuizen • 0

8 results • Page 1 of 1

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Comment: Annotation package for Manduca sexta by GA ▴ 10

Thank you!

Comment: Improving performance of edgeR and limma while adjusting for multiple confounder by ATpoint ★ 4.8k

If 2 minutes is inacceptable to you then you can still fall back to limma-trend which should give a dramatic speedup and finish in seconds.…

Comment: getBM from biomaRt inconsistencies found with .gtf files across multiple species by Mike Smith ★ 6.6k

Great, thanks for the update from Ensembl. So the most relevant part of 'Location: Scaffold HG1277_PATCH: 137,021-141,806 forward strand' …

Answer: Improving performance of edgeR and limma while adjusting for multiple confounder by Gordon Smyth 52k

We recommend that you use voomLmFit() instead of voom+lmFit. We are pretty proud of the speed of glmQLFit and voom, and we hadn't expected…

Answer: Merging EPICV1 and V2 betas by James W. MacDonald 68k

It appears that [SeSAMe][1] has functions meant to do that sort of thing. [1]: https://bioconductor.org/packages/release/bioc/vignet…

Votes

Looking for equivalent EPIC chip v1 vs. v2 annotation variables

Properly constructing a hypergeometric test

A: Is logFC a log2 fold change or some other base in scran::findMarkers

Comment: Error in retrieving clinical data

What is the cheapest day to fly on American Airlines? {Ask_Expert}

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