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Isoforms
•
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2
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2
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1.1k
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Confounding DE results with DESeq2
isoforms
DESeq2
2.9 years ago
arfranco
▴ 130
1
vote
9
replies
2.5k
views
Difference between gene-level test and transcript-level test with RATs (Relative Abundance of Transcrits)
RATs
RNA-Seq
Isoforms
DTU
expression
updated 5.6 years ago by
fruce_ki
▴ 20 • written 5.6 years ago by
UserAnonyme
• 0
0
votes
3
replies
1.8k
views
Downstream analysis for Salmon output: IsoformSwitchAnalyzeR or TSIS?
isoforms
diffrential expression
noncoding rna
TSIS
isoformswitchanalyzeR
6.8 years ago
rbenel
▴ 40
0
votes
0
replies
1.2k
views
Metadata sheet for DEXSeq analysis
dexseq
differential isoform usage
isoforms
summarizeoverlaps
granges
6.9 years ago
A
▴ 40
0
votes
0
replies
1.7k
views
cummeRbund heatmap for specific isoforms (not genes)
cummerbund
heatmap
isoforms
transcript_id
7.9 years ago
domenico.somma
• 0
5
votes
18
replies
3.8k
views
Incongruencies between DEXSeq and BitSeq/Cuffdiff
dexseq
bitseq
cuffdiff
Differential exon usage
isoforms
9.7 years ago
elle
▴ 10
5
votes
3
replies
2.8k
views
edgeR: annotation and isoform analysis alternatives
edgeR
ruvseq
rnaseq
isoforms
9.8 years ago • updated 9.7 years ago
sergio.espeso-gil
• 0
1
vote
2
replies
1.6k
views
DEXSeq transcripts per condition
DEXSeq
transcripts
isoforms
updated 9.8 years ago by
Alejandro Reyes
★ 1.9k • written 9.8 years ago by
peter_venhuizen
• 0
8 results • Page
1 of 1
Recent ...
Replies
Comment: How to formulate 2 factor nested design in DESeq2
by
Mariane
• 0
Hi JK Kim, I'm having a problem similar to the one you reported. Could you please tell me how you solved this problem? Thanks
Comment: batch effect removal for agilent microarray data
by
gaye.yilmaz
• 0
Thank you
Answer: Pathview visualisation not including positive log2 fold changes
by
James W. MacDonald
68k
Without providing a self-contained example, nobody can tell you if/where you went wrong. Since you get a KEGG pathway with some of the gene…
Comment: Differential variance analysis - can i use deseq2
by
Marwan
• 0
Thanks Michael for your answer, i didnt mean to use Deseq2 directly for the variance testing, but more like asking if using the (VST) data…
Answer: Differential variance analysis - can i use deseq2
by
Michael Love
43k
We don't have a test of differential variance but other Bioconductor packages can, check similar posts (even on the right side bar) or use …
Votes
Answer: Differential expression of protein coding ENSGs (Ensembl IDs) | When to biomaRt?
Suggesting changing the "reply-to" field to the mailing list address.
Answer: UniProt.ws query for single UniRef90 ID takes several minutes
A: How to extract DESeq2 results for an interaction design
Comment: how should I apply "cpg.annotate" to TCGA methylation data in hg38 for HM450K?
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