Log In
Sign Up
about
faq
Ask a question
Latest
News
Jobs
Tutorials
Tags
Users
New Post
Latest
News
Jobs
Tutorials
Tags
Users
Log In
Sign Up
About
Limit
all time
today
this week
this month
this year
Unanswered
All posts
Sort
Update
Answers
Bookmarks
Creation
Replies
Rank
Views
Votes
Showing :
Isoforms
•
reset
2
votes
2
replies
1.0k
views
Confounding DE results with DESeq2
isoforms
DESeq2
2.9 years ago
arfranco
▴ 130
1
vote
9
replies
2.4k
views
Difference between gene-level test and transcript-level test with RATs (Relative Abundance of Transcrits)
RATs
RNA-Seq
Isoforms
DTU
expression
updated 5.6 years ago by
fruce_ki
▴ 20 • written 5.6 years ago by
UserAnonyme
• 0
0
votes
3
replies
1.7k
views
Downstream analysis for Salmon output: IsoformSwitchAnalyzeR or TSIS?
isoforms
diffrential expression
noncoding rna
TSIS
isoformswitchanalyzeR
6.7 years ago
rbenel
▴ 40
0
votes
0
replies
1.1k
views
Metadata sheet for DEXSeq analysis
dexseq
differential isoform usage
isoforms
summarizeoverlaps
granges
6.9 years ago
A
▴ 40
0
votes
0
replies
1.7k
views
cummeRbund heatmap for specific isoforms (not genes)
cummerbund
heatmap
isoforms
transcript_id
7.9 years ago
domenico.somma
• 0
5
votes
18
replies
3.8k
views
Incongruencies between DEXSeq and BitSeq/Cuffdiff
dexseq
bitseq
cuffdiff
Differential exon usage
isoforms
9.7 years ago • updated 9.6 years ago
elle
▴ 10
5
votes
3
replies
2.8k
views
edgeR: annotation and isoform analysis alternatives
edgeR
ruvseq
rnaseq
isoforms
9.7 years ago
sergio.espeso-gil
• 0
1
vote
2
replies
1.6k
views
DEXSeq transcripts per condition
DEXSeq
transcripts
isoforms
updated 9.7 years ago by
Alejandro Reyes
★ 1.9k • written 9.8 years ago by
peter_venhuizen
• 0
8 results • Page
1 of 1
Recent ...
Replies
Comment: GSVA on RNAseq data
by
Robert Castelo
★ 3.4k
Hi Bob, I have not investigated whether a particular unit of expression works better than others, but using logTPM or logCPM units of expr…
Answer: Store Matrix in DataFrame Cell
by
James W. MacDonald
68k
Put it in a list and put the list in a column.
Comment: For some reason I can't update BiocManager to 3.20
by
James W. MacDonald
68k
Please post output from starting R and then running `sessionInfo()` (as requested by the web form you use to post questions). I get ``` > …
Comment: p-value the same for different contrasts DESeq2
by
caroline.zanchi
• 0
It would be great if it were possible to do something similar using GlmGamPoi !
Comment: Web accessibility of Bioconductor.org
by
Sean Davis
21k
Added issue to website github repo: https://github.com/Bioconductor/bioconductor.org/issues/304
Votes
Answer: Standardization of rlog transformed counts before PCA
Answer: Standardization of rlog transformed counts before PCA
Answer: Standardization of rlog transformed counts before PCA
Answer: Standardization of rlog transformed counts before PCA
A: Rtracklayer fails to export TxDb as GFF3 without CDS
Awards
• All
Popular Question
to
Robert Castelo
★ 3.4k
Popular Question
to
ATpoint
★ 4.6k
Popular Question
to
Sean Davis
21k
Popular Question
to
Vincent J. Carey, Jr.
6.7k
Popular Question
to
ruwaa.ibrahem
• 0
Locations
• All
Australia,
8 minutes ago
WEHI, Melbourne, Australia,
1 hour ago
The city by the bay,
2 hours ago
United States,
2 hours ago
Canada,
3 hours ago
Traffic: 949 users visited in the last hour
Content
Search
Users
Tags
Badges
Help
About
FAQ
Access
RSS
API
Stats
Use of this site constitutes acceptance of our
User Agreement and Privacy Policy
.
Powered by the
version 2.3.6