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LFC
•
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0
votes
7
replies
2.3k
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LRT test followed by filtering based on LFC
deseq2
LFC
LRT
written 7.0 years ago by
sally.badawi
• 0
1
vote
1
reply
1.4k
views
Gene wise dispersion estimate Process - From the prior to the posterior
GLM
prior
DESeq
LFC
updated 3.6 years ago by
Michael Love
43k • written 3.6 years ago by
stew
• 0
0
votes
1
reply
1.8k
views
Filtering DESeq2 results for | LFC | > 1 genes
RNAseq
LFC
DEseq
4.7 years ago
ayy2110
• 0
0
votes
6
replies
2.6k
views
large range of LFC in DESeq2
deseq2
lfc
betaprior
updated 3.3 years ago by
Michael Love
43k • written 7.2 years ago by
Mariaxi
• 0
17
votes
7
replies
16k
views
DESeq2 lfcShrink() usage of coef vs. usage of contrast
deseq2
lfc
coef
contrast
updated 8.5 years ago by
Michael Love
43k • written 8.5 years ago by
Anke Busch
▴ 10
6
votes
4
replies
3.7k
views
Identification of DEGs through limma analysis
limma
microarray
DEGs
p values
lfc
8.6 years ago
rkp
• 0
4
votes
14
replies
23k
views
standard error value (lfcSE) returned by DeSeq2
deseq2
deseq
lfc
lfcse
standard error
updated 8.8 years ago by
rraadd_8
• 0 • written 8.9 years ago by
tootiki
• 0
2
votes
1
reply
3.1k
views
Using Limma to identify any differences between multiple treatment groups (without making pairwise comparisons)
microarray
limma
multiple treatments
lfc
updated 9.7 years ago by
Aaron Lun
★ 29k • written 9.7 years ago by
brionyk9
• 0
8 results • Page
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Comment: soGGi error
by
shepherl
4.3k
We have tried to contact the soGGi maintainer to have them update the package to the newer version of gglot2 but they have so far been unre…
Comment: using limma trend workflow in CAMERA
by
Gordon Smyth
53k
No, `trend.var=TRUE` and `trend=TRUE` are not needed in any voom pipeline, because the trend is already incorporated into the voom weights.
Comment: Questions about bacon QC and correction on EWAS results
by
Tikaaa2sahaaaq2c
• 0
In the world of mobile games, the 88ef game download has gained traction for its performance driven design [free download][1], similar to …
Comment: using limma trend workflow in CAMERA
by
A.Barden
▴ 20
Do you need to set trend.var=TRUE when using camera in the limma-voom pipeline with RNA-Seq data (as apposed to limma-trend pipeline)?
Comment: Upcoming Ensembl API and data access changes - new blog post available
by
Tikaaa2sahaaaq2c
• 0
Just as the Ensembl team transitions to a new platform for streamlined data access, diners can benefit from a digital newks menu prices con…
Votes
Comment: using limma trend workflow in CAMERA
C: z-score with DESeq2?
Answer: What happens to genes with low dispersion during dispersion shrinkage in DESeq2
Comment: Are transformed values from rlog /vst log2 normalized counts?
Answer: Are transformed values from rlog /vst log2 normalized counts?
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