Bioconductor LFC

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2.1k

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deseq2 LFC LRT

written 6.7 years ago by sally.badawi • 0

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1.2k

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GLM prior DESeq LFC

updated 3.4 years ago by Michael Love 43k • written 3.4 years ago by stew • 0

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1.7k

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RNAseq LFC DEseq

4.4 years ago ayy2110 • 0

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2.3k

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deseq2 lfc betaprior

updated 3.0 years ago by Michael Love 43k • written 6.9 years ago by Mariaxi • 0

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15k

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deseq2 lfc coef contrast

updated 8.2 years ago by Michael Love 43k • written 8.2 years ago by Anke Busch ▴ 10

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3.5k

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limma microarray DEGs p values lfc

8.4 years ago rkp • 0

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22k

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deseq2 deseq lfc lfcse standard error

updated 8.6 years ago by rraadd_8 • 0 • written 8.7 years ago by tootiki • 0

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3.0k

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microarray limma multiple treatments lfc

updated 9.5 years ago by Aaron Lun ★ 29k • written 9.5 years ago by brionyk9 • 0

8 results • Page 1 of 1

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Comment: "Watched Tags" are being erased rather than updated by shepherl 4.2k

I can reproduce this and have opened an issue on the code base https://github.com/Bioconductor/support.bioconductor.org/issues/112

Comment: "Watched Tags" are being erased rather than updated by shepherl 4.2k

we can investigate this issue. thank you for bringing it to our attention

Comment: deseq2 filter the low counts by Michael Love 43k

> But within each comparison (contrast), if I trace some DEGs back to the original salmon merged gene counts (or even to normalised counts)…

Comment: deseq2 filter the low counts by empty_mt • 0

Thank you for you suggestion to look at the pre-filtering section in the DESeq2 vignettes - am I missing something? I have 6 treatments, …

Comment: deseq2 filter the low counts by Michael Love 43k

Have you seen this part: https://bioconductor.org/packages/release/bioc/vignettes/DESeq2/inst/doc/DESeq2.html#pre-filtering

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Bioconductor 3.22 Released!

Comment: "Watched Tags" are being erased rather than updated

Comment: deseq2 filter the low counts

Answer: DESeq2 interactions

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